fast.genomicscompare 6,575 genera of bacteria & archaea

 

Leaf443 sp001425575 Leaf443

Genome identifier: GCF_001425575.1

NCBI assembly name: Leaf443

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Leaf443, Leaf443 sp001425575

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Aurantimonadaceae, Aurantimonas

Scaffolds: 13

Genes: 3,628 Protein-coding: 3,541 RNAs: 51 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LMRD01000001.1 Aurantimonas sp. Leaf443 contig_1, whole genome shotgun sequence 804,273
NZ_LMRD01000002.1 Aurantimonas sp. Leaf443 contig_10, whole genome shotgun sequence 140,190
NZ_LMRD01000003.1 Aurantimonas sp. Leaf443 contig_11, whole genome shotgun sequence 65,700
NZ_LMRD01000004.1 Aurantimonas sp. Leaf443 contig_12, whole genome shotgun sequence 27,490
NZ_LMRD01000005.1 Aurantimonas sp. Leaf443 contig_13, whole genome shotgun sequence 21,301
NZ_LMRD01000006.1 Aurantimonas sp. Leaf443 contig_2, whole genome shotgun sequence 776,881
NZ_LMRD01000007.1 Aurantimonas sp. Leaf443 contig_3, whole genome shotgun sequence 699,723
NZ_LMRD01000008.1 Aurantimonas sp. Leaf443 contig_4, whole genome shotgun sequence 472,080
NZ_LMRD01000009.1 Aurantimonas sp. Leaf443 contig_5, whole genome shotgun sequence 256,328
NZ_LMRD01000010.1 Aurantimonas sp. Leaf443 contig_6, whole genome shotgun sequence 185,980
NZ_LMRD01000011.1 Aurantimonas sp. Leaf443 contig_7, whole genome shotgun sequence 169,018
NZ_LMRD01000012.1 Aurantimonas sp. Leaf443 contig_8, whole genome shotgun sequence 150,182
NZ_LMRD01000013.1 Aurantimonas sp. Leaf443 contig_9, whole genome shotgun sequence 138,921

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory