fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pararhizobium sp001425605 Leaf453

Genome identifier: GCF_001425605.1

NCBI assembly name: Leaf453

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Pararhizobium, Pararhizobium sp001425605

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Rhizobium

Scaffolds: 31

Genes: 6,151 Protein-coding: 5,948 RNAs: 54 pseudogenes: 149

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LMRG01000001.1 Rhizobium sp. Leaf453 contig_1, whole genome shotgun sequence 966,858
NZ_LMRG01000002.1 Rhizobium sp. Leaf453 contig_10, whole genome shotgun sequence 231,128
NZ_LMRG01000003.1 Rhizobium sp. Leaf453 contig_11, whole genome shotgun sequence 211,121
NZ_LMRG01000004.1 Rhizobium sp. Leaf453 contig_12, whole genome shotgun sequence 200,311
NZ_LMRG01000005.1 Rhizobium sp. Leaf453 contig_13, whole genome shotgun sequence 190,380
NZ_LMRG01000006.1 Rhizobium sp. Leaf453 contig_14, whole genome shotgun sequence 325,224
NZ_LMRG01000007.1 Rhizobium sp. Leaf453 contig_15, whole genome shotgun sequence 165,351
NZ_LMRG01000008.1 Rhizobium sp. Leaf453 contig_16, whole genome shotgun sequence 162,067
NZ_LMRG01000009.1 Rhizobium sp. Leaf453 contig_17, whole genome shotgun sequence 129,383
NZ_LMRG01000010.1 Rhizobium sp. Leaf453 contig_18, whole genome shotgun sequence 164,088
NZ_LMRG01000011.1 Rhizobium sp. Leaf453 contig_19, whole genome shotgun sequence 75,447
NZ_LMRG01000012.1 Rhizobium sp. Leaf453 contig_2, whole genome shotgun sequence 741,451
NZ_LMRG01000013.1 Rhizobium sp. Leaf453 contig_20, whole genome shotgun sequence 45,481
NZ_LMRG01000014.1 Rhizobium sp. Leaf453 contig_21, whole genome shotgun sequence 34,358
NZ_LMRG01000015.1 Rhizobium sp. Leaf453 contig_22, whole genome shotgun sequence 28,106
NZ_LMRG01000016.1 Rhizobium sp. Leaf453 contig_23, whole genome shotgun sequence 26,535
NZ_LMRG01000017.1 Rhizobium sp. Leaf453 contig_24, whole genome shotgun sequence 23,754
NZ_LMRG01000018.1 Rhizobium sp. Leaf453 contig_25, whole genome shotgun sequence 17,083
NZ_LMRG01000019.1 Rhizobium sp. Leaf453 contig_26, whole genome shotgun sequence 6,713
NZ_LMRG01000020.1 Rhizobium sp. Leaf453 contig_27, whole genome shotgun sequence 4,849
NZ_LMRG01000021.1 Rhizobium sp. Leaf453 contig_28, whole genome shotgun sequence 4,715
NZ_LMRG01000022.1 Rhizobium sp. Leaf453 contig_29, whole genome shotgun sequence 1,964
NZ_LMRG01000023.1 Rhizobium sp. Leaf453 contig_3, whole genome shotgun sequence 716,188
NZ_LMRG01000024.1 Rhizobium sp. Leaf453 contig_30, whole genome shotgun sequence 1,296
NZ_LMRG01000025.1 Rhizobium sp. Leaf453 contig_31, whole genome shotgun sequence 1,048
NZ_LMRG01000026.1 Rhizobium sp. Leaf453 contig_4, whole genome shotgun sequence 388,757
NZ_LMRG01000027.1 Rhizobium sp. Leaf453 contig_5, whole genome shotgun sequence 364,320
NZ_LMRG01000028.1 Rhizobium sp. Leaf453 contig_6, whole genome shotgun sequence 324,325
NZ_LMRG01000029.1 Rhizobium sp. Leaf453 contig_7, whole genome shotgun sequence 314,995
NZ_LMRG01000030.1 Rhizobium sp. Leaf453 contig_8, whole genome shotgun sequence 263,629
NZ_LMRG01000031.1 Rhizobium sp. Leaf453 contig_9, whole genome shotgun sequence 237,529

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory