fast.genomicscompare 6,575 genera of bacteria & archaea

 

LMSL01 sp001428405 Soil773

Genome identifier: GCF_001428405.1

NCBI assembly name: Soil773

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Rhodanobacteraceae, LMSL01, LMSL01 sp001428405

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Rhodanobacteraceae, Frateuria

Scaffolds: 41

Genes: 3,985 Protein-coding: 3,859 RNAs: 58 pseudogenes: 68

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LMSL01000001.1 Frateuria sp. Soil773 contig_1, whole genome shotgun sequence 22,477
NZ_LMSL01000002.1 Frateuria sp. Soil773 contig_10, whole genome shotgun sequence 584,563
NZ_LMSL01000003.1 Frateuria sp. Soil773 contig_11, whole genome shotgun sequence 82,508
NZ_LMSL01000004.1 Frateuria sp. Soil773 contig_12, whole genome shotgun sequence 121,675
NZ_LMSL01000005.1 Frateuria sp. Soil773 contig_13, whole genome shotgun sequence 154,280
NZ_LMSL01000006.1 Frateuria sp. Soil773 contig_14, whole genome shotgun sequence 131,899
NZ_LMSL01000007.1 Frateuria sp. Soil773 contig_15, whole genome shotgun sequence 2,988
NZ_LMSL01000008.1 Frateuria sp. Soil773 contig_16, whole genome shotgun sequence 89,815
NZ_LMSL01000009.1 Frateuria sp. Soil773 contig_17, whole genome shotgun sequence 3,728
NZ_LMSL01000010.1 Frateuria sp. Soil773 contig_18, whole genome shotgun sequence 122,342
NZ_LMSL01000011.1 Frateuria sp. Soil773 contig_19, whole genome shotgun sequence 95,392
NZ_LMSL01000012.1 Frateuria sp. Soil773 contig_2, whole genome shotgun sequence 58,067
NZ_LMSL01000013.1 Frateuria sp. Soil773 contig_20, whole genome shotgun sequence 97,463
NZ_LMSL01000014.1 Frateuria sp. Soil773 contig_21, whole genome shotgun sequence 165,639
NZ_LMSL01000015.1 Frateuria sp. Soil773 contig_22, whole genome shotgun sequence 36,866
NZ_LMSL01000016.1 Frateuria sp. Soil773 contig_23, whole genome shotgun sequence 113,990
NZ_LMSL01000017.1 Frateuria sp. Soil773 contig_24, whole genome shotgun sequence 30,919
NZ_LMSL01000018.1 Frateuria sp. Soil773 contig_25, whole genome shotgun sequence 129,134
NZ_LMSL01000019.1 Frateuria sp. Soil773 contig_26, whole genome shotgun sequence 66,887
NZ_LMSL01000020.1 Frateuria sp. Soil773 contig_27, whole genome shotgun sequence 1,027
NZ_LMSL01000021.1 Frateuria sp. Soil773 contig_28, whole genome shotgun sequence 1,048
NZ_LMSL01000022.1 Frateuria sp. Soil773 contig_29, whole genome shotgun sequence 1,228
NZ_LMSL01000023.1 Frateuria sp. Soil773 contig_3, whole genome shotgun sequence 175,461
NZ_LMSL01000024.1 Frateuria sp. Soil773 contig_30, whole genome shotgun sequence 1,439
NZ_LMSL01000025.1 Frateuria sp. Soil773 contig_31, whole genome shotgun sequence 1,849
NZ_LMSL01000026.1 Frateuria sp. Soil773 contig_32, whole genome shotgun sequence 1,924
NZ_LMSL01000027.1 Frateuria sp. Soil773 contig_33, whole genome shotgun sequence 2,222
NZ_LMSL01000028.1 Frateuria sp. Soil773 contig_34, whole genome shotgun sequence 2,539
NZ_LMSL01000029.1 Frateuria sp. Soil773 contig_35, whole genome shotgun sequence 3,158
NZ_LMSL01000030.1 Frateuria sp. Soil773 contig_36, whole genome shotgun sequence 4,665
NZ_LMSL01000031.1 Frateuria sp. Soil773 contig_37, whole genome shotgun sequence 12,036
NZ_LMSL01000032.1 Frateuria sp. Soil773 contig_38, whole genome shotgun sequence 18,853
NZ_LMSL01000033.1 Frateuria sp. Soil773 contig_39, whole genome shotgun sequence 21,714
NZ_LMSL01000034.1 Frateuria sp. Soil773 contig_4, whole genome shotgun sequence 253,826
NZ_LMSL01000035.1 Frateuria sp. Soil773 contig_40, whole genome shotgun sequence 50,881
NZ_LMSL01000036.1 Frateuria sp. Soil773 contig_41, whole genome shotgun sequence 83,020
NZ_LMSL01000037.1 Frateuria sp. Soil773 contig_5, whole genome shotgun sequence 6,825
NZ_LMSL01000038.1 Frateuria sp. Soil773 contig_6, whole genome shotgun sequence 84,233
NZ_LMSL01000039.1 Frateuria sp. Soil773 contig_7, whole genome shotgun sequence 536,446
NZ_LMSL01000040.1 Frateuria sp. Soil773 contig_8, whole genome shotgun sequence 392,592
NZ_LMSL01000041.1 Frateuria sp. Soil773 contig_9, whole genome shotgun sequence 780,544

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory