fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thalassobacter stenotrophicus CECT 5294

Genome identifier: GCF_001458315.1

NCBI assembly name: T.stenotrophicusCECT5294_Spades_Prokka

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Thalassobacter, Thalassobacter stenotrophicus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Thalassobacter, Thalassobacter stenotrophicus

Scaffolds: 33

Genes: 3,591 Protein-coding: 3,515 RNAs: 48 pseudogenes: 28

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CYRX01000001.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 1,172
NZ_CYRX01000002.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 2,556
NZ_CYRX01000003.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 5,893
NZ_CYRX01000004.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 20,833
NZ_CYRX01000005.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 62,208
NZ_CYRX01000006.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 54,778
NZ_CYRX01000007.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 96,674
NZ_CYRX01000008.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 173,382
NZ_CYRX01000009.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 214,517
NZ_CYRX01000010.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 255,336
NZ_CYRX01000011.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 325,098
NZ_CYRX01000012.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 1,054
NZ_CYRX01000013.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 3,403
NZ_CYRX01000014.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 7,463
NZ_CYRX01000015.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 5,441
NZ_CYRX01000016.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 10,608
NZ_CYRX01000017.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 11,073
NZ_CYRX01000018.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 2,313
NZ_CYRX01000019.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 2,315
NZ_CYRX01000020.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 4,460
NZ_CYRX01000021.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 7,288
NZ_CYRX01000022.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 10,236
NZ_CYRX01000023.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 11,043
NZ_CYRX01000024.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 113,144
NZ_CYRX01000025.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 363,314
NZ_CYRX01000026.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 166,130
NZ_CYRX01000027.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 1,044
NZ_CYRX01000028.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 3,452
NZ_CYRX01000029.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 70,758
NZ_CYRX01000030.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 119,091
NZ_CYRX01000031.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 595,457
NZ_CYRX01000032.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 187,901
NZ_CYRX01000033.1 Thalassobacter stenotrophicus strain CECT 5294, whole genome shotgun sequence 682,620

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory