fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thalassobius mediterraneus CECT 5383

Genome identifier: GCF_001458435.1

NCBI assembly name: T.mediterraneus_CECT5383_Seqman_Prokka

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Thalassobius, Thalassobius mediterraneus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Thalassobius, Thalassobius mediterraneus

Scaffolds: 19

Genes: 3,315 Protein-coding: 3,224 RNAs: 59 pseudogenes: 32

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CYSF01000001.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 263,467
NZ_CYSF01000002.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 176,403
NZ_CYSF01000003.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 160,381
NZ_CYSF01000004.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 11,985
NZ_CYSF01000005.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 198,147
NZ_CYSF01000006.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 730,297
NZ_CYSF01000007.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 484,687
NZ_CYSF01000008.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 21,485
NZ_CYSF01000009.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 216,570
NZ_CYSF01000010.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 5,330
NZ_CYSF01000011.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 58,243
NZ_CYSF01000012.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 363,097
NZ_CYSF01000013.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 5,870
NZ_CYSF01000014.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 29,813
NZ_CYSF01000015.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 85,166
NZ_CYSF01000016.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 20,840
NZ_CYSF01000017.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 312,125
NZ_CYSF01000018.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 182,603
NZ_CYSF01000019.1 Thalassobius mediterraneus strain CECT 5383, whole genome shotgun sequence 105,148

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory