fast.genomicscompare 6,575 genera of bacteria & archaea

 

Mediterraneibacter massiliensis Marseille-P2086

Genome identifier: GCF_001487105.1

NCBI assembly name: Ruminococcus phoceensis

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Mediterraneibacter, Mediterraneibacter massiliensis

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Mediterraneibacter, Mediterraneibacter massiliensis

Scaffolds: 5

Genes: 2,946 Protein-coding: 2,834 RNAs: 66 pseudogenes: 46

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LN912997.1 Mediterraneibacter massiliensis strain Marseille-P2086, whole genome shotgun sequence 932
NZ_LN912998.1 Mediterraneibacter massiliensis strain Marseille-P2086, whole genome shotgun sequence 5,140
NZ_LN912999.1 Mediterraneibacter massiliensis strain Marseille-P2086, whole genome shotgun sequence 188,553
NZ_LN913000.1 Mediterraneibacter massiliensis strain Marseille-P2086, whole genome shotgun sequence 710,312
NZ_LN913001.1 Mediterraneibacter massiliensis strain Marseille-P2086, whole genome shotgun sequence 2,164,948

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory