fast.genomicscompare 6,575 genera of bacteria & archaea

 

Protochlamydia_A phocaeensis C2

Genome identifier: GCF_001545115.1

NCBI assembly name: Protochlamydia greubae

GTDB taxonomy: Bacteria, Chlamydiota, Chlamydiia, Chlamydiales, Parachlamydiaceae, Protochlamydia_A, Protochlamydia_A phocaeensis

NCBI taxonomy: Bacteria, Chlamydiota, Chlamydiia, Parachlamydiales, Parachlamydiaceae, Candidatus Protochlamydia, Candidatus Protochlamydia phocaeensis

Scaffolds: 32

Genes: 2,846 Protein-coding: 2,776 RNAs: 47 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FCNU01000001.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 12,607
NZ_FCNU01000002.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 205,818
NZ_FCNU01000003.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 1,097
NZ_FCNU01000004.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 2,298
NZ_FCNU01000005.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 1,784
NZ_FCNU01000006.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 2,481
NZ_FCNU01000007.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 542,758
NZ_FCNU01000008.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 5,442
NZ_FCNU01000009.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 6,009
NZ_FCNU01000010.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 119,210
NZ_FCNU01000011.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 396,984
NZ_FCNU01000012.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 74,567
NZ_FCNU01000013.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 1,843
NZ_FCNU01000014.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 17,882
NZ_FCNU01000015.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 18,564
NZ_FCNU01000016.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 5,442
NZ_FCNU01000017.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 86,427
NZ_FCNU01000018.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 6,074
NZ_FCNU01000019.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 104,733
NZ_FCNU01000020.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 31,210
NZ_FCNU01000021.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 164,580
NZ_FCNU01000022.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 316,127
NZ_FCNU01000023.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 173,270
NZ_FCNU01000024.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 12,823
NZ_FCNU01000025.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 12,023
NZ_FCNU01000026.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 6,518
NZ_FCNU01000027.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 1,360
NZ_FCNU01000028.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 341,654
NZ_FCNU01000029.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 63,315
NZ_FCNU01000030.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 96,975
NZ_FCNU01000031.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 188,804
NZ_FCNU01000032.1 Candidatus Protochlamydia phocaeensis strain C2, whole genome shotgun sequence 403,503

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory