fast.genomicscompare 6,575 genera of bacteria & archaea

 

Paramesorhizobium deserti A-3-E

Genome identifier: GCF_001558695.1

NCBI assembly name: ASM155869v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Paramesorhizobium, Paramesorhizobium deserti

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Paramesorhizobium, Paramesorhizobium deserti

Scaffolds: 41

Genes: 5,253 Protein-coding: 5,034 RNAs: 53 pseudogenes: 166

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LNTU01000001.1 Paramesorhizobium deserti strain A-3-E Scaffold1, whole genome shotgun sequence 1,479,410
NZ_LNTU01000002.1 Paramesorhizobium deserti strain A-3-E Scaffold10, whole genome shotgun sequence 152,965
NZ_LNTU01000003.1 Paramesorhizobium deserti strain A-3-E Scaffold11, whole genome shotgun sequence 84,291
NZ_LNTU01000004.1 Paramesorhizobium deserti strain A-3-E Scaffold12, whole genome shotgun sequence 73,640
NZ_LNTU01000005.1 Paramesorhizobium deserti strain A-3-E Scaffold13, whole genome shotgun sequence 44,912
NZ_LNTU01000006.1 Paramesorhizobium deserti strain A-3-E Scaffold14, whole genome shotgun sequence 29,747
NZ_LNTU01000007.1 Paramesorhizobium deserti strain A-3-E Scaffold15, whole genome shotgun sequence 20,397
NZ_LNTU01000008.1 Paramesorhizobium deserti strain A-3-E Scaffold16, whole genome shotgun sequence 16,933
NZ_LNTU01000009.1 Paramesorhizobium deserti strain A-3-E Scaffold17, whole genome shotgun sequence 16,708
NZ_LNTU01000010.1 Paramesorhizobium deserti strain A-3-E Scaffold18, whole genome shotgun sequence 16,398
NZ_LNTU01000011.1 Paramesorhizobium deserti strain A-3-E Scaffold19, whole genome shotgun sequence 16,240
NZ_LNTU01000012.1 Paramesorhizobium deserti strain A-3-E Scaffold2, whole genome shotgun sequence 709,776
NZ_LNTU01000013.1 Paramesorhizobium deserti strain A-3-E Scaffold20, whole genome shotgun sequence 12,559
NZ_LNTU01000014.1 Paramesorhizobium deserti strain A-3-E Scaffold21, whole genome shotgun sequence 11,215
NZ_LNTU01000015.1 Paramesorhizobium deserti strain A-3-E Scaffold22, whole genome shotgun sequence 10,240
NZ_LNTU01000016.1 Paramesorhizobium deserti strain A-3-E Scaffold23, whole genome shotgun sequence 9,483
NZ_LNTU01000017.1 Paramesorhizobium deserti strain A-3-E Scaffold24, whole genome shotgun sequence 8,972
NZ_LNTU01000018.1 Paramesorhizobium deserti strain A-3-E Scaffold25, whole genome shotgun sequence 8,123
NZ_LNTU01000019.1 Paramesorhizobium deserti strain A-3-E Scaffold26, whole genome shotgun sequence 5,872
NZ_LNTU01000020.1 Paramesorhizobium deserti strain A-3-E Scaffold27, whole genome shotgun sequence 4,419
NZ_LNTU01000021.1 Paramesorhizobium deserti strain A-3-E Scaffold28, whole genome shotgun sequence 4,208
NZ_LNTU01000022.1 Paramesorhizobium deserti strain A-3-E Scaffold29, whole genome shotgun sequence 3,409
NZ_LNTU01000023.1 Paramesorhizobium deserti strain A-3-E Scaffold3, whole genome shotgun sequence 693,742
NZ_LNTU01000024.1 Paramesorhizobium deserti strain A-3-E Scaffold30, whole genome shotgun sequence 2,855
NZ_LNTU01000025.1 Paramesorhizobium deserti strain A-3-E Scaffold31, whole genome shotgun sequence 2,685
NZ_LNTU01000026.1 Paramesorhizobium deserti strain A-3-E Scaffold32, whole genome shotgun sequence 2,481
NZ_LNTU01000027.1 Paramesorhizobium deserti strain A-3-E Scaffold33, whole genome shotgun sequence 2,400
NZ_LNTU01000028.1 Paramesorhizobium deserti strain A-3-E Scaffold34, whole genome shotgun sequence 2,135
NZ_LNTU01000029.1 Paramesorhizobium deserti strain A-3-E Scaffold35, whole genome shotgun sequence 1,692
NZ_LNTU01000030.1 Paramesorhizobium deserti strain A-3-E Scaffold36, whole genome shotgun sequence 1,652
NZ_LNTU01000031.1 Paramesorhizobium deserti strain A-3-E Scaffold37, whole genome shotgun sequence 941
NZ_LNTU01000032.1 Paramesorhizobium deserti strain A-3-E Scaffold38, whole genome shotgun sequence 869
NZ_LNTU01000033.1 Paramesorhizobium deserti strain A-3-E Scaffold39, whole genome shotgun sequence 747
NZ_LNTU01000034.1 Paramesorhizobium deserti strain A-3-E Scaffold4, whole genome shotgun sequence 540,454
NZ_LNTU01000035.1 Paramesorhizobium deserti strain A-3-E Scaffold40, whole genome shotgun sequence 720
NZ_LNTU01000036.1 Paramesorhizobium deserti strain A-3-E Scaffold41, whole genome shotgun sequence 565
NZ_LNTU01000037.1 Paramesorhizobium deserti strain A-3-E Scaffold5, whole genome shotgun sequence 479,137
NZ_LNTU01000038.1 Paramesorhizobium deserti strain A-3-E Scaffold6, whole genome shotgun sequence 342,600
NZ_LNTU01000039.1 Paramesorhizobium deserti strain A-3-E Scaffold7, whole genome shotgun sequence 301,642
NZ_LNTU01000040.1 Paramesorhizobium deserti strain A-3-E Scaffold8, whole genome shotgun sequence 197,270
NZ_LNTU01000041.1 Paramesorhizobium deserti strain A-3-E Scaffold9, whole genome shotgun sequence 167,710

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory