fast.genomicscompare 6,575 genera of bacteria & archaea

 

Amylibacter sediminis CY02

Genome identifier: GCF_001719615.1

NCBI assembly name: ASM171961v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Amylibacter, Amylibacter sediminis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Neptunicoccus, Neptunicoccus sediminis

Scaffolds: 73

Genes: 3,707 Protein-coding: 3,616 RNAs: 47 pseudogenes: 44

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_MDVX01000001.1 Neptunicoccus sediminis strain CY02 Scaffold1_1, whole genome shotgun sequence 849,958
NZ_MDVX01000002.1 Neptunicoccus sediminis strain CY02 Scaffold2_1, whole genome shotgun sequence 530,576
NZ_MDVX01000003.1 Neptunicoccus sediminis strain CY02 Scaffold3_1, whole genome shotgun sequence 411,594
NZ_MDVX01000004.1 Neptunicoccus sediminis strain CY02 Scaffold3_2, whole genome shotgun sequence 91,992
NZ_MDVX01000005.1 Neptunicoccus sediminis strain CY02 Scaffold4_1, whole genome shotgun sequence 1,261
NZ_MDVX01000006.1 Neptunicoccus sediminis strain CY02 Scaffold4_2, whole genome shotgun sequence 319
NZ_MDVX01000007.1 Neptunicoccus sediminis strain CY02 Scaffold4_3, whole genome shotgun sequence 636
NZ_MDVX01000008.1 Neptunicoccus sediminis strain CY02 Scaffold4_4, whole genome shotgun sequence 316,018
NZ_MDVX01000009.1 Neptunicoccus sediminis strain CY02 Scaffold4_5, whole genome shotgun sequence 132,111
NZ_MDVX01000010.1 Neptunicoccus sediminis strain CY02 Scaffold5_1, whole genome shotgun sequence 17,002
NZ_MDVX01000011.1 Neptunicoccus sediminis strain CY02 Scaffold5_2, whole genome shotgun sequence 293,101
NZ_MDVX01000012.1 Neptunicoccus sediminis strain CY02 Scaffold6_1, whole genome shotgun sequence 206,437
NZ_MDVX01000013.1 Neptunicoccus sediminis strain CY02 Scaffold7_1, whole genome shotgun sequence 165,277
NZ_MDVX01000014.1 Neptunicoccus sediminis strain CY02 Scaffold8_1, whole genome shotgun sequence 104,744
NZ_MDVX01000015.1 Neptunicoccus sediminis strain CY02 Scaffold8_2, whole genome shotgun sequence 46,330
NZ_MDVX01000016.1 Neptunicoccus sediminis strain CY02 Scaffold9_1, whole genome shotgun sequence 108,188
NZ_MDVX01000017.1 Neptunicoccus sediminis strain CY02 Scaffold10_1, whole genome shotgun sequence 92,988
NZ_MDVX01000018.1 Neptunicoccus sediminis strain CY02 Scaffold11_1, whole genome shotgun sequence 87,096
NZ_MDVX01000019.1 Neptunicoccus sediminis strain CY02 Scaffold12_1, whole genome shotgun sequence 66,460
NZ_MDVX01000020.1 Neptunicoccus sediminis strain CY02 Scaffold13_1, whole genome shotgun sequence 44,692
NZ_MDVX01000021.1 Neptunicoccus sediminis strain CY02 Scaffold14_1, whole genome shotgun sequence 43,197
NZ_MDVX01000022.1 Neptunicoccus sediminis strain CY02 Scaffold15_1, whole genome shotgun sequence 1,214
NZ_MDVX01000023.1 Neptunicoccus sediminis strain CY02 Scaffold15_2, whole genome shotgun sequence 3,300
NZ_MDVX01000024.1 Neptunicoccus sediminis strain CY02 Scaffold15_3, whole genome shotgun sequence 790
NZ_MDVX01000025.1 Neptunicoccus sediminis strain CY02 Scaffold15_4, whole genome shotgun sequence 5,169
NZ_MDVX01000026.1 Neptunicoccus sediminis strain CY02 Scaffold15_5, whole genome shotgun sequence 1,188
NZ_MDVX01000027.1 Neptunicoccus sediminis strain CY02 Scaffold15_6, whole genome shotgun sequence 691
NZ_MDVX01000028.1 Neptunicoccus sediminis strain CY02 Scaffold15_7, whole genome shotgun sequence 2,000
NZ_MDVX01000029.1 Neptunicoccus sediminis strain CY02 Scaffold15_8, whole genome shotgun sequence 5,205
NZ_MDVX01000030.1 Neptunicoccus sediminis strain CY02 Scaffold15_9, whole genome shotgun sequence 4,007
NZ_MDVX01000031.1 Neptunicoccus sediminis strain CY02 Scaffold15_10, whole genome shotgun sequence 2,651
NZ_MDVX01000032.1 Neptunicoccus sediminis strain CY02 Scaffold15_11, whole genome shotgun sequence 3,287
NZ_MDVX01000033.1 Neptunicoccus sediminis strain CY02 Scaffold15_12, whole genome shotgun sequence 4,938
NZ_MDVX01000034.1 Neptunicoccus sediminis strain CY02 Scaffold15_13, whole genome shotgun sequence 1,034
NZ_MDVX01000035.1 Neptunicoccus sediminis strain CY02 Scaffold15_14, whole genome shotgun sequence 1,735
NZ_MDVX01000036.1 Neptunicoccus sediminis strain CY02 Scaffold15_15, whole genome shotgun sequence 3,412
NZ_MDVX01000037.1 Neptunicoccus sediminis strain CY02 Scaffold16_1, whole genome shotgun sequence 35,358
NZ_MDVX01000038.1 Neptunicoccus sediminis strain CY02 Scaffold17_1, whole genome shotgun sequence 28,552
NZ_MDVX01000039.1 Neptunicoccus sediminis strain CY02 Scaffold18_1, whole genome shotgun sequence 5,297
NZ_MDVX01000040.1 Neptunicoccus sediminis strain CY02 Scaffold18_2, whole genome shotgun sequence 3,952
NZ_MDVX01000041.1 Neptunicoccus sediminis strain CY02 Scaffold18_3, whole genome shotgun sequence 2,581
NZ_MDVX01000042.1 Neptunicoccus sediminis strain CY02 Scaffold18_4, whole genome shotgun sequence 2,349
NZ_MDVX01000043.1 Neptunicoccus sediminis strain CY02 Scaffold18_5, whole genome shotgun sequence 2,214
NZ_MDVX01000044.1 Neptunicoccus sediminis strain CY02 Scaffold18_6, whole genome shotgun sequence 5,053
NZ_MDVX01000045.1 Neptunicoccus sediminis strain CY02 Scaffold18_7, whole genome shotgun sequence 3,826
NZ_MDVX01000046.1 Neptunicoccus sediminis strain CY02 Scaffold19_1, whole genome shotgun sequence 19,770
NZ_MDVX01000047.1 Neptunicoccus sediminis strain CY02 Scaffold20_1, whole genome shotgun sequence 2,342
NZ_MDVX01000048.1 Neptunicoccus sediminis strain CY02 Scaffold20_2, whole genome shotgun sequence 7,724
NZ_MDVX01000049.1 Neptunicoccus sediminis strain CY02 Scaffold20_3, whole genome shotgun sequence 4,587
NZ_MDVX01000050.1 Neptunicoccus sediminis strain CY02 Scaffold20_4, whole genome shotgun sequence 393
NZ_MDVX01000051.1 Neptunicoccus sediminis strain CY02 Scaffold20_5, whole genome shotgun sequence 640
NZ_MDVX01000052.1 Neptunicoccus sediminis strain CY02 Scaffold21_1, whole genome shotgun sequence 323
NZ_MDVX01000053.1 Neptunicoccus sediminis strain CY02 Scaffold21_2, whole genome shotgun sequence 11,841
NZ_MDVX01000054.1 Neptunicoccus sediminis strain CY02 Scaffold22_1, whole genome shotgun sequence 1,975
NZ_MDVX01000055.1 Neptunicoccus sediminis strain CY02 Scaffold22_2, whole genome shotgun sequence 2,457
NZ_MDVX01000056.1 Neptunicoccus sediminis strain CY02 Scaffold22_3, whole genome shotgun sequence 6,225
NZ_MDVX01000057.1 Neptunicoccus sediminis strain CY02 Scaffold23_1, whole genome shotgun sequence 10,429
NZ_MDVX01000058.1 Neptunicoccus sediminis strain CY02 Scaffold24_1, whole genome shotgun sequence 10,105
NZ_MDVX01000059.1 Neptunicoccus sediminis strain CY02 Scaffold25_1, whole genome shotgun sequence 9,313
NZ_MDVX01000060.1 Neptunicoccus sediminis strain CY02 Scaffold26_1, whole genome shotgun sequence 3,250
NZ_MDVX01000061.1 Neptunicoccus sediminis strain CY02 Scaffold26_2, whole genome shotgun sequence 488
NZ_MDVX01000062.1 Neptunicoccus sediminis strain CY02 Scaffold26_3, whole genome shotgun sequence 1,330
NZ_MDVX01000063.1 Neptunicoccus sediminis strain CY02 Scaffold26_4, whole genome shotgun sequence 2,164
NZ_MDVX01000064.1 Neptunicoccus sediminis strain CY02 Scaffold26_5, whole genome shotgun sequence 267
NZ_MDVX01000065.1 Neptunicoccus sediminis strain CY02 Scaffold26_6, whole genome shotgun sequence 1,013
NZ_MDVX01000066.1 Neptunicoccus sediminis strain CY02 Scaffold27_1, whole genome shotgun sequence 8,207
NZ_MDVX01000067.1 Neptunicoccus sediminis strain CY02 Scaffold28_1, whole genome shotgun sequence 2,892
NZ_MDVX01000068.1 Neptunicoccus sediminis strain CY02 Scaffold28_2, whole genome shotgun sequence 3,597
NZ_MDVX01000069.1 Neptunicoccus sediminis strain CY02 Scaffold29_1, whole genome shotgun sequence 3,455
NZ_MDVX01000070.1 Neptunicoccus sediminis strain CY02 Scaffold30_1, whole genome shotgun sequence 2,529
NZ_MDVX01000071.1 Neptunicoccus sediminis strain CY02 Scaffold31_1, whole genome shotgun sequence 2,496
NZ_MDVX01000072.1 Neptunicoccus sediminis strain CY02 Scaffold32_1, whole genome shotgun sequence 2,494
NZ_MDVX01000073.1 Neptunicoccus sediminis strain CY02 Scaffold33_1, whole genome shotgun sequence 1,875

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory