fast.genomicscompare 6,575 genera of bacteria & archaea

 

LPB0142 sp001856665 LPB0142

Genome identifier: GCF_001856665.1

NCBI assembly name: ASM185666v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, LPB0142, LPB0142 sp001856665

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Rhodobacter

Scaffolds: 4

Genes: 3,765 Protein-coding: 3,606 RNAs: 65 pseudogenes: 94

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP017781.1 Rhodobacter xanthinilyticus strain LPB0142 chromosome, complete genome 3,462,926
NZ_CP017782.1 Rhodobacter xanthinilyticus strain LPB0142 plasmid pEJ01, complete sequence 264,008
NZ_CP017783.1 Rhodobacter xanthinilyticus strain LPB0142 plasmid pEJ02, complete sequence 29,119
NZ_CP017784.1 Rhodobacter xanthinilyticus strain LPB0142 plasmid pEJ03, complete sequence 24,776

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory