fast.genomicscompare 6,575 genera of bacteria & archaea

 

Acuticoccus yangtzensis JL1095

Genome identifier: GCF_001927245.1

NCBI assembly name: ASM192724v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Amorphaceae, Acuticoccus, Acuticoccus yangtzensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Amorphaceae, Acuticoccus, Acuticoccus yangtzensis

Scaffolds: 29

Genes: 4,458 Protein-coding: 4,341 RNAs: 56 pseudogenes: 61

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_MJUX01000001.1 Acuticoccus yangtzensis strain JL1095 Contig1_1, whole genome shotgun sequence 1,392,722
NZ_MJUX01000002.1 Acuticoccus yangtzensis strain JL1095 Contig2_1, whole genome shotgun sequence 646,117
NZ_MJUX01000003.1 Acuticoccus yangtzensis strain JL1095 Contig3_1, whole genome shotgun sequence 469,686
NZ_MJUX01000004.1 Acuticoccus yangtzensis strain JL1095 Contig4_1, whole genome shotgun sequence 467,907
NZ_MJUX01000005.1 Acuticoccus yangtzensis strain JL1095 Contig5_1, whole genome shotgun sequence 326,922
NZ_MJUX01000006.1 Acuticoccus yangtzensis strain JL1095 Contig6_1, whole genome shotgun sequence 314,458
NZ_MJUX01000007.1 Acuticoccus yangtzensis strain JL1095 Contig7_1, whole genome shotgun sequence 313,193
NZ_MJUX01000008.1 Acuticoccus yangtzensis strain JL1095 Contig8_1, whole genome shotgun sequence 282,307
NZ_MJUX01000009.1 Acuticoccus yangtzensis strain JL1095 Contig9_1, whole genome shotgun sequence 198,556
NZ_MJUX01000010.1 Acuticoccus yangtzensis strain JL1095 Contig10_1, whole genome shotgun sequence 134,530
NZ_MJUX01000011.1 Acuticoccus yangtzensis strain JL1095 Contig11_1, whole genome shotgun sequence 125,518
NZ_MJUX01000012.1 Acuticoccus yangtzensis strain JL1095 Contig12_1, whole genome shotgun sequence 92,169
NZ_MJUX01000013.1 Acuticoccus yangtzensis strain JL1095 Contig13_1, whole genome shotgun sequence 88,105
NZ_MJUX01000014.1 Acuticoccus yangtzensis strain JL1095 Contig14_1, whole genome shotgun sequence 41,719
NZ_MJUX01000015.1 Acuticoccus yangtzensis strain JL1095 Contig15_1, whole genome shotgun sequence 32,161
NZ_MJUX01000016.1 Acuticoccus yangtzensis strain JL1095 Contig16_1, whole genome shotgun sequence 30,841
NZ_MJUX01000017.1 Acuticoccus yangtzensis strain JL1095 Contig17_1, whole genome shotgun sequence 28,358
NZ_MJUX01000018.1 Acuticoccus yangtzensis strain JL1095 Contig18_1, whole genome shotgun sequence 3,178
NZ_MJUX01000019.1 Acuticoccus yangtzensis strain JL1095 Contig18_2, whole genome shotgun sequence 12,768
NZ_MJUX01000020.1 Acuticoccus yangtzensis strain JL1095 Contig19_1, whole genome shotgun sequence 14,697
NZ_MJUX01000021.1 Acuticoccus yangtzensis strain JL1095 Contig20_1, whole genome shotgun sequence 8,097
NZ_MJUX01000022.1 Acuticoccus yangtzensis strain JL1095 Contig21_1, whole genome shotgun sequence 5,562
NZ_MJUX01000023.1 Acuticoccus yangtzensis strain JL1095 Contig22_1, whole genome shotgun sequence 5,527
NZ_MJUX01000024.1 Acuticoccus yangtzensis strain JL1095 Contig23_1, whole genome shotgun sequence 3,884
NZ_MJUX01000025.1 Acuticoccus yangtzensis strain JL1095 Contig24_1, whole genome shotgun sequence 1,073
NZ_MJUX01000026.1 Acuticoccus yangtzensis strain JL1095 Contig25_1, whole genome shotgun sequence 1,016
NZ_MJUX01000027.1 Acuticoccus yangtzensis strain JL1095 Contig26_1, whole genome shotgun sequence 789
NZ_MJUX01000028.1 Acuticoccus yangtzensis strain JL1095 Contig27_1, whole genome shotgun sequence 706
NZ_MJUX01000029.1 Acuticoccus yangtzensis strain JL1095 Contig28_1, whole genome shotgun sequence 697

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory