fast.genomicscompare 6,575 genera of bacteria & archaea

 

Methyloprofundus sedimenti WF1

Genome identifier: GCF_002072955.1

NCBI assembly name: ASM207295v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Methylococcales, Methylomonadaceae, Methyloprofundus, Methyloprofundus sedimenti

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Methylococcales, Methylococcaceae, Methyloprofundus, Methyloprofundus sedimenti

Scaffolds: 6

Genes: 3,949 Protein-coding: 3,827 RNAs: 57 pseudogenes: 65

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LPUF01000001.1 Methyloprofundus sedimenti strain WF1 Contig001, whole genome shotgun sequence 2,895,801
NZ_LPUF01000002.1 Methyloprofundus sedimenti strain WF1 Contig002, whole genome shotgun sequence 391,348
NZ_LPUF01000003.1 Methyloprofundus sedimenti strain WF1 Contig003, whole genome shotgun sequence 588,402
NZ_LPUF01000004.1 Methyloprofundus sedimenti strain WF1 Contig004, whole genome shotgun sequence 232,440
NZ_LPUF01000005.1 Methyloprofundus sedimenti strain WF1 Contig005, whole genome shotgun sequence 94,751
NZ_LPUF01000006.1 Methyloprofundus sedimenti strain WF1 Contig006, whole genome shotgun sequence 87,784

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory