fast.genomicscompare 6,575 genera of bacteria & archaea

 

Desulfurella amilsii TR1

Genome identifier: GCF_002119425.1

NCBI assembly name: ASM211942v1

GTDB taxonomy: Bacteria, Campylobacterota_A, Desulfurellia, Desulfurellales, Desulfurellaceae, Desulfurella, Desulfurella amilsii

NCBI taxonomy: Bacteria, Campylobacterota, Desulfurellia, Desulfurellales, Desulfurellaceae, Desulfurella, Desulfurella amilsii

Scaffolds: 20

Genes: 2,102 Protein-coding: 2,040 RNAs: 55 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_MDSU01000001.1 Desulfurella amilsii strain TR1 HybridContig12, whole genome shotgun sequence 272,064
NZ_MDSU01000002.1 Desulfurella amilsii strain TR1 HybridContig9, whole genome shotgun sequence 32,875
NZ_MDSU01000003.1 Desulfurella amilsii strain TR1 opera_scaffold_6, whole genome shotgun sequence 8,690
NZ_MDSU01000004.1 Desulfurella amilsii strain TR1 opera_scaffold_3, whole genome shotgun sequence 50,431
NZ_MDSU01000005.1 Desulfurella amilsii strain TR1 HybridContig10, whole genome shotgun sequence 9,998
NZ_MDSU01000006.1 Desulfurella amilsii strain TR1 opera_scaffold_13, whole genome shotgun sequence 535
NZ_MDSU01000007.1 Desulfurella amilsii strain TR1 opera_scaffold_5, whole genome shotgun sequence 9,276
NZ_MDSU01000008.1 Desulfurella amilsii strain TR1 opera_scaffold_9, whole genome shotgun sequence 596
NZ_MDSU01000009.1 Desulfurella amilsii strain TR1 opera_scaffold_11, whole genome shotgun sequence 589
NZ_MDSU01000010.1 Desulfurella amilsii strain TR1 opera_scaffold_4, whole genome shotgun sequence 50,344
NZ_MDSU01000011.1 Desulfurella amilsii strain TR1 opera_scaffold_2, whole genome shotgun sequence 133,514
NZ_MDSU01000012.1 Desulfurella amilsii strain TR1 opera_scaffold_10, whole genome shotgun sequence 593
NZ_MDSU01000013.1 Desulfurella amilsii strain TR1 HybridContig7, whole genome shotgun sequence 33,036
NZ_MDSU01000014.1 Desulfurella amilsii strain TR1 HybridContig6, whole genome shotgun sequence 2,579
NZ_MDSU01000015.1 Desulfurella amilsii strain TR1 HybridContig11, whole genome shotgun sequence 20,533
NZ_MDSU01000016.1 Desulfurella amilsii strain TR1 HybridContig5, whole genome shotgun sequence 36,002
NZ_MDSU01000017.1 Desulfurella amilsii strain TR1 opera_scaffold_8, whole genome shotgun sequence 5,405
NZ_MDSU01000018.1 Desulfurella amilsii strain TR1 opera_scaffold_1, whole genome shotgun sequence 1,269,579
NZ_MDSU01000019.1 Desulfurella amilsii strain TR1 opera_scaffold_12, whole genome shotgun sequence 562
NZ_MDSU01000020.1 Desulfurella amilsii strain TR1 HybridContig8, whole genome shotgun sequence 65,579

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory