fast.genomicscompare 6,575 genera of bacteria & archaea

 

R-RK-3 sp002198715 R_RK_3

Genome identifier: GCF_002198715.1

NCBI assembly name: ASM219871v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhodomicrobiaceae, R-RK-3, R-RK-3 sp002198715

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Hyphomicrobiaceae, Rhodomicrobium

Scaffolds: 39

Genes: 5,257 Protein-coding: 5,113 RNAs: 58 pseudogenes: 86

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_MWLK01000001.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_1, whole genome shotgun sequence 232,910
NZ_MWLK01000002.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_2, whole genome shotgun sequence 44,541
NZ_MWLK01000003.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_3, whole genome shotgun sequence 95,458
NZ_MWLK01000004.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_4, whole genome shotgun sequence 46,373
NZ_MWLK01000005.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_5, whole genome shotgun sequence 61,514
NZ_MWLK01000006.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_6, whole genome shotgun sequence 350,485
NZ_MWLK01000007.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_7, whole genome shotgun sequence 30,263
NZ_MWLK01000008.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_8, whole genome shotgun sequence 284,710
NZ_MWLK01000009.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_9, whole genome shotgun sequence 83,664
NZ_MWLK01000010.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_10, whole genome shotgun sequence 2,822
NZ_MWLK01000011.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_11, whole genome shotgun sequence 17,277
NZ_MWLK01000012.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_12, whole genome shotgun sequence 57,383
NZ_MWLK01000013.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_13, whole genome shotgun sequence 185,945
NZ_MWLK01000014.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_14, whole genome shotgun sequence 50,925
NZ_MWLK01000015.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_15, whole genome shotgun sequence 349,753
NZ_MWLK01000016.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_16, whole genome shotgun sequence 204,496
NZ_MWLK01000017.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_17, whole genome shotgun sequence 63,307
NZ_MWLK01000018.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_18, whole genome shotgun sequence 217,056
NZ_MWLK01000019.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_19, whole genome shotgun sequence 4,680
NZ_MWLK01000020.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_20, whole genome shotgun sequence 67,812
NZ_MWLK01000021.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_21, whole genome shotgun sequence 339,815
NZ_MWLK01000022.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_22, whole genome shotgun sequence 226,044
NZ_MWLK01000023.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_23, whole genome shotgun sequence 77,133
NZ_MWLK01000024.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_24, whole genome shotgun sequence 95,744
NZ_MWLK01000025.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_25, whole genome shotgun sequence 47,892
NZ_MWLK01000026.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_26, whole genome shotgun sequence 170,790
NZ_MWLK01000027.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_27, whole genome shotgun sequence 78,144
NZ_MWLK01000028.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_28, whole genome shotgun sequence 50,445
NZ_MWLK01000029.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_29, whole genome shotgun sequence 111,395
NZ_MWLK01000030.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_30, whole genome shotgun sequence 341,466
NZ_MWLK01000031.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_31, whole genome shotgun sequence 176,876
NZ_MWLK01000032.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_32, whole genome shotgun sequence 198,130
NZ_MWLK01000033.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_33, whole genome shotgun sequence 249,425
NZ_MWLK01000034.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_34, whole genome shotgun sequence 159,306
NZ_MWLK01000035.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_35, whole genome shotgun sequence 60,889
NZ_MWLK01000036.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_36, whole genome shotgun sequence 401,427
NZ_MWLK01000037.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_37, whole genome shotgun sequence 276,044
NZ_MWLK01000038.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_38, whole genome shotgun sequence 94,031
NZ_MWLK01000039.1 Rhodomicrobium sp. R_RK_3 BLEFHOIH_39, whole genome shotgun sequence 180,127

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory