fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rubricoccus marinus SG-29

Genome identifier: GCF_002257665.1

NCBI assembly name: ASM225766v1

GTDB taxonomy: Bacteria, Bacteroidota, Rhodothermia, Rhodothermales, Rubricoccaceae, Rubricoccus, Rubricoccus marinus

NCBI taxonomy: Bacteria, Rhodothermota, Rhodothermia, Rhodothermales, Rubricoccaceae, Rubricoccus, Rubricoccus marinus

Scaffolds: 15

Genes: 3,811 Protein-coding: 3,739 RNAs: 52 pseudogenes: 20

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_MQWB01000001.1 Rubricoccus marinus strain SG-29 scaffold1_cov42_read155, whole genome shotgun sequence 3,954,487
NZ_MQWB01000002.1 Rubricoccus marinus strain SG-29 scaffold10_cov32_read155, whole genome shotgun sequence 2,854
NZ_MQWB01000003.1 Rubricoccus marinus strain SG-29 scaffold11_cov6_read155, whole genome shotgun sequence 403
NZ_MQWB01000004.1 Rubricoccus marinus strain SG-29 scaffold12_cov2_read155, whole genome shotgun sequence 300
NZ_MQWB01000005.1 Rubricoccus marinus strain SG-29 scaffold15_cov6_read155, whole genome shotgun sequence 355
NZ_MQWB01000006.1 Rubricoccus marinus strain SG-29 scaffold16_cov42_read155, whole genome shotgun sequence 349
NZ_MQWB01000007.1 Rubricoccus marinus strain SG-29 scaffold21_cov39_read155, whole genome shotgun sequence 2,573
NZ_MQWB01000008.1 Rubricoccus marinus strain SG-29 scaffold22_cov2_read155, whole genome shotgun sequence 300
NZ_MQWB01000009.1 Rubricoccus marinus strain SG-29 scaffold23_cov77_read155, whole genome shotgun sequence 948
NZ_MQWB01000010.1 Rubricoccus marinus strain SG-29 scaffold24_cov175_read155, whole genome shotgun sequence 139,488
NZ_MQWB01000011.1 Rubricoccus marinus strain SG-29 scaffold25_cov214_read155, whole genome shotgun sequence 168,486
NZ_MQWB01000012.1 Rubricoccus marinus strain SG-29 scaffold26_cov159_read155, whole genome shotgun sequence 1,722
NZ_MQWB01000013.1 Rubricoccus marinus strain SG-29 scaffold29_cov132_read155, whole genome shotgun sequence 2,441
NZ_MQWB01000014.1 Rubricoccus marinus strain SG-29 scaffold30_cov129_read155, whole genome shotgun sequence 90,452
NZ_MQWB01000015.1 Rubricoccus marinus strain SG-29 scaffold31_cov338_read155, whole genome shotgun sequence 65,283

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory