fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rubrivirga marina SAORIC-28

Genome identifier: GCF_002283365.1

NCBI assembly name: ASM228336v1

GTDB taxonomy: Bacteria, Bacteroidota, Rhodothermia, Rhodothermales, Rubricoccaceae, Rubrivirga, Rubrivirga marina

NCBI taxonomy: Bacteria, Rhodothermota, Rhodothermia, Rhodothermales, Rubricoccaceae, Rubrivirga, Rubrivirga marina

Scaffolds: 11

Genes: 4,293 Protein-coding: 4,218 RNAs: 53 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_MQWD01000001.1 Rubrivirga marina strain SAORIC-28 scaffold1_cov77_read148, whole genome shotgun sequence 4,711,327
NZ_MQWD01000002.1 Rubrivirga marina strain SAORIC-28 scaffold2_cov41_read148, whole genome shotgun sequence 943
NZ_MQWD01000003.1 Rubrivirga marina strain SAORIC-28 scaffold3_cov93_read148, whole genome shotgun sequence 730
NZ_MQWD01000004.1 Rubrivirga marina strain SAORIC-28 scaffold4_cov92_read148, whole genome shotgun sequence 386
NZ_MQWD01000005.1 Rubrivirga marina strain SAORIC-28 scaffold6_cov127_read148, whole genome shotgun sequence 170,049
NZ_MQWD01000006.1 Rubrivirga marina strain SAORIC-28 scaffold7_cov95_read148, whole genome shotgun sequence 602
NZ_MQWD01000007.1 Rubrivirga marina strain SAORIC-28 scaffold8_cov173_read148, whole genome shotgun sequence 719
NZ_MQWD01000008.1 Rubrivirga marina strain SAORIC-28 scaffold9_cov186_read148, whole genome shotgun sequence 716
NZ_MQWD01000009.1 Rubrivirga marina strain SAORIC-28 scaffold10_cov212_read148, whole genome shotgun sequence 415
NZ_MQWD01000010.1 Rubrivirga marina strain SAORIC-28 scaffold11_cov183_read148, whole genome shotgun sequence 94,505
NZ_MQWD01000011.1 Rubrivirga marina strain SAORIC-28 scaffold13_cov203_read148, whole genome shotgun sequence 683

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory