fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sediminicola_A luteus HQA918

Genome identifier: GCF_002514735.1

NCBI assembly name: ASM251473v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Sediminicola_A, Sediminicola_A luteus

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Sediminicola, Sediminicola luteus

Scaffolds: 10

Genes: 3,802 Protein-coding: 3,748 RNAs: 49 pseudogenes: 5

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KZ300476.1 Sediminicola luteus strain HQA918 scaffold2, whole genome shotgun sequence 1,089,853
NZ_KZ300477.1 Sediminicola luteus strain HQA918 scaffold5, whole genome shotgun sequence 522,367
NZ_NBWU01000001.1 Sediminicola luteus strain HQA918 contig1, whole genome shotgun sequence 1,313,841
NZ_NBWU01000004.1 Sediminicola luteus strain HQA918 contig4, whole genome shotgun sequence 677,333
NZ_NBWU01000005.1 Sediminicola luteus strain HQA918 contig5, whole genome shotgun sequence 573,911
NZ_NBWU01000008.1 Sediminicola luteus strain HQA918 contig8, whole genome shotgun sequence 279,400
NZ_NBWU01000009.1 Sediminicola luteus strain HQA918 contig9, whole genome shotgun sequence 100,462
NZ_NBWU01000010.1 Sediminicola luteus strain HQA918 contig10, whole genome shotgun sequence 5,312
NZ_NBWU01000011.1 Sediminicola luteus strain HQA918 contig11, whole genome shotgun sequence 2,013
NZ_NBWU01000012.1 Sediminicola luteus strain HQA918 contig12, whole genome shotgun sequence 1,526

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory