fast.genomicscompare 6,575 genera of bacteria & archaea

 

Oceaniglobus indicus 1-19b

Genome identifier: GCF_002751875.1

NCBI assembly name: ASM275187v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Oceaniglobus, Oceaniglobus indicus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Oceaniglobus, Oceaniglobus indicus

Scaffolds: 26

Genes: 3,596 Protein-coding: 3,504 RNAs: 48 pseudogenes: 44

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_NMZM01000001.1 Oceaniglobus indicus strain 1-19b NODE_1_length_539513_cov_221.824, whole genome shotgun sequence 539,513
NZ_NMZM01000002.1 Oceaniglobus indicus strain 1-19b NODE_2_length_538585_cov_323.247, whole genome shotgun sequence 538,585
NZ_NMZM01000003.1 Oceaniglobus indicus strain 1-19b NODE_3_length_408068_cov_281.844, whole genome shotgun sequence 408,068
NZ_NMZM01000004.1 Oceaniglobus indicus strain 1-19b NODE_4_length_380862_cov_251.228, whole genome shotgun sequence 380,862
NZ_NMZM01000005.1 Oceaniglobus indicus strain 1-19b NODE_5_length_314828_cov_252.918, whole genome shotgun sequence 314,828
NZ_NMZM01000006.1 Oceaniglobus indicus strain 1-19b NODE_6_length_250974_cov_269.425, whole genome shotgun sequence 250,974
NZ_NMZM01000007.1 Oceaniglobus indicus strain 1-19b NODE_7_length_238559_cov_234.592, whole genome shotgun sequence 238,559
NZ_NMZM01000008.1 Oceaniglobus indicus strain 1-19b NODE_8_length_199791_cov_252.124, whole genome shotgun sequence 199,791
NZ_NMZM01000009.1 Oceaniglobus indicus strain 1-19b NODE_9_length_182985_cov_253.606, whole genome shotgun sequence 182,985
NZ_NMZM01000010.1 Oceaniglobus indicus strain 1-19b NODE_10_length_168316_cov_297.844, whole genome shotgun sequence 168,316
NZ_NMZM01000011.1 Oceaniglobus indicus strain 1-19b NODE_11_length_92148_cov_166.448, whole genome shotgun sequence 92,148
NZ_NMZM01000012.1 Oceaniglobus indicus strain 1-19b NODE_12_length_88894_cov_272.896, whole genome shotgun sequence 88,894
NZ_NMZM01000013.1 Oceaniglobus indicus strain 1-19b NODE_13_length_46500_cov_339.107, whole genome shotgun sequence 46,500
NZ_NMZM01000014.1 Oceaniglobus indicus strain 1-19b NODE_14_length_41736_cov_71.0469, whole genome shotgun sequence 41,736
NZ_NMZM01000015.1 Oceaniglobus indicus strain 1-19b NODE_15_length_37723_cov_243.223, whole genome shotgun sequence 37,723
NZ_NMZM01000016.1 Oceaniglobus indicus strain 1-19b NODE_16_length_37250_cov_118.124, whole genome shotgun sequence 37,250
NZ_NMZM01000017.1 Oceaniglobus indicus strain 1-19b NODE_17_length_28148_cov_274.391, whole genome shotgun sequence 28,148
NZ_NMZM01000018.1 Oceaniglobus indicus strain 1-19b NODE_18_length_26113_cov_303.286, whole genome shotgun sequence 26,113
NZ_NMZM01000019.1 Oceaniglobus indicus strain 1-19b NODE_19_length_20656_cov_279.525, whole genome shotgun sequence 20,656
NZ_NMZM01000020.1 Oceaniglobus indicus strain 1-19b NODE_20_length_15739_cov_233.906, whole genome shotgun sequence 15,739
NZ_NMZM01000021.1 Oceaniglobus indicus strain 1-19b NODE_21_length_6141_cov_362.618, whole genome shotgun sequence 6,141
NZ_NMZM01000022.1 Oceaniglobus indicus strain 1-19b NODE_25_length_1951_cov_318.958, whole genome shotgun sequence 1,951
NZ_NMZM01000023.1 Oceaniglobus indicus strain 1-19b NODE_27_length_1691_cov_340.985, whole genome shotgun sequence 1,691
NZ_NMZM01000024.1 Oceaniglobus indicus strain 1-19b NODE_33_length_1284_cov_606.748, whole genome shotgun sequence 1,284
NZ_NMZM01000025.1 Oceaniglobus indicus strain 1-19b NODE_34_length_1212_cov_889.9, whole genome shotgun sequence 1,212
NZ_NMZM01000026.1 Oceaniglobus indicus strain 1-19b NODE_35_length_1203_cov_2128.41, whole genome shotgun sequence 1,203

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory