fast.genomicscompare 6,575 genera of bacteria & archaea

 

Caulobacter vibrioides DSM 9893

Genome identifier: GCF_002858865.1

NCBI assembly name: ASM285886v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Caulobacteraceae, Caulobacter, Caulobacter vibrioides

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Caulobacteraceae, Caulobacter, Caulobacter vibrioides

Scaffolds: 25

Genes: 3,978 Protein-coding: 3,750 RNAs: 56 pseudogenes: 172

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_PJRR01000001.1 Caulobacter vibrioides strain DSM 9893 CVUC1, whole genome shotgun sequence 23,533
NZ_PJRR01000002.1 Caulobacter vibrioides strain DSM 9893 CVUC2, whole genome shotgun sequence 4,351
NZ_PJRR01000003.1 Caulobacter vibrioides strain DSM 9893 CVUC3, whole genome shotgun sequence 61,324
NZ_PJRR01000004.1 Caulobacter vibrioides strain DSM 9893 CVUC4, whole genome shotgun sequence 237,258
NZ_PJRR01000005.1 Caulobacter vibrioides strain DSM 9893 CVUC5, whole genome shotgun sequence 264,731
NZ_PJRR01000006.1 Caulobacter vibrioides strain DSM 9893 CVUC6, whole genome shotgun sequence 54,382
NZ_PJRR01000007.1 Caulobacter vibrioides strain DSM 9893 CVUC7, whole genome shotgun sequence 204,621
NZ_PJRR01000008.1 Caulobacter vibrioides strain DSM 9893 CVUC8, whole genome shotgun sequence 225,853
NZ_PJRR01000009.1 Caulobacter vibrioides strain DSM 9893 CVUC9, whole genome shotgun sequence 201,572
NZ_PJRR01000010.1 Caulobacter vibrioides strain DSM 9893 CVUC10, whole genome shotgun sequence 28,153
NZ_PJRR01000011.1 Caulobacter vibrioides strain DSM 9893 CVUC11, whole genome shotgun sequence 30,603
NZ_PJRR01000012.1 Caulobacter vibrioides strain DSM 9893 CVUC12, whole genome shotgun sequence 335,421
NZ_PJRR01000013.1 Caulobacter vibrioides strain DSM 9893 CVUC13, whole genome shotgun sequence 308,168
NZ_PJRR01000014.1 Caulobacter vibrioides strain DSM 9893 CVUC14, whole genome shotgun sequence 339,646
NZ_PJRR01000015.1 Caulobacter vibrioides strain DSM 9893 CVUC15, whole genome shotgun sequence 110,348
NZ_PJRR01000016.1 Caulobacter vibrioides strain DSM 9893 CVUC16, whole genome shotgun sequence 283,476
NZ_PJRR01000017.1 Caulobacter vibrioides strain DSM 9893 CVUC17, whole genome shotgun sequence 95,855
NZ_PJRR01000018.1 Caulobacter vibrioides strain DSM 9893 CVUC18, whole genome shotgun sequence 76,164
NZ_PJRR01000019.1 Caulobacter vibrioides strain DSM 9893 CVUC19, whole genome shotgun sequence 584,655
NZ_PJRR01000020.1 Caulobacter vibrioides strain DSM 9893 CVUC20, whole genome shotgun sequence 43,962
NZ_PJRR01000021.1 Caulobacter vibrioides strain DSM 9893 CVUC21, whole genome shotgun sequence 133,899
NZ_PJRR01000022.1 Caulobacter vibrioides strain DSM 9893 CVUC22, whole genome shotgun sequence 96,022
NZ_PJRR01000023.1 Caulobacter vibrioides strain DSM 9893 CVUC23, whole genome shotgun sequence 5,617
NZ_PJRR01000024.1 Caulobacter vibrioides strain DSM 9893 CVUC24, whole genome shotgun sequence 2,792
NZ_PJRR01000025.1 Caulobacter vibrioides strain DSM 9893 CVUC25, whole genome shotgun sequence 214,030

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory