fast.genomicscompare 6,575 genera of bacteria & archaea

 

Mangrovicella endophytica 5T4P-12-1

Genome identifier: GCF_002893625.1

NCBI assembly name: ASM289362v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Mangrovicella, Mangrovicella endophytica

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Aurantimonadaceae, Mangrovicella, Mangrovicella endophytica

Scaffolds: 35

Genes: 4,133 Protein-coding: 4,036 RNAs: 54 pseudogenes: 43

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_PKMZ01000001.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_0, whole genome shotgun sequence 1,200,165
NZ_PKMZ01000002.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_1, whole genome shotgun sequence 702,259
NZ_PKMZ01000003.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_2, whole genome shotgun sequence 569,830
NZ_PKMZ01000004.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_3, whole genome shotgun sequence 278,031
NZ_PKMZ01000005.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_4, whole genome shotgun sequence 258,918
NZ_PKMZ01000006.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_5, whole genome shotgun sequence 184,977
NZ_PKMZ01000007.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_6, whole genome shotgun sequence 158,854
NZ_PKMZ01000008.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_7, whole genome shotgun sequence 153,943
NZ_PKMZ01000009.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_8, whole genome shotgun sequence 144,435
NZ_PKMZ01000010.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_9, whole genome shotgun sequence 137,979
NZ_PKMZ01000011.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_10, whole genome shotgun sequence 131,909
NZ_PKMZ01000012.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_11, whole genome shotgun sequence 105,633
NZ_PKMZ01000013.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_12, whole genome shotgun sequence 91,777
NZ_PKMZ01000014.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_13, whole genome shotgun sequence 69,364
NZ_PKMZ01000015.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_14, whole genome shotgun sequence 55,413
NZ_PKMZ01000016.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_15, whole genome shotgun sequence 35,844
NZ_PKMZ01000017.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_16, whole genome shotgun sequence 33,711
NZ_PKMZ01000018.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_17, whole genome shotgun sequence 29,512
NZ_PKMZ01000019.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_18, whole genome shotgun sequence 28,865
NZ_PKMZ01000020.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_19, whole genome shotgun sequence 23,848
NZ_PKMZ01000021.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_20, whole genome shotgun sequence 15,457
NZ_PKMZ01000022.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_21, whole genome shotgun sequence 6,583
NZ_PKMZ01000023.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_22, whole genome shotgun sequence 2,267
NZ_PKMZ01000024.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_23, whole genome shotgun sequence 1,716
NZ_PKMZ01000025.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_24, whole genome shotgun sequence 1,429
NZ_PKMZ01000026.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_25, whole genome shotgun sequence 1,187
NZ_PKMZ01000027.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_26, whole genome shotgun sequence 1,177
NZ_PKMZ01000028.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_27, whole genome shotgun sequence 983
NZ_PKMZ01000029.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_28, whole genome shotgun sequence 1,380
NZ_PKMZ01000030.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_29, whole genome shotgun sequence 950
NZ_PKMZ01000031.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_30, whole genome shotgun sequence 796
NZ_PKMZ01000032.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_31, whole genome shotgun sequence 761
NZ_PKMZ01000033.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_32, whole genome shotgun sequence 593
NZ_PKMZ01000034.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_33, whole genome shotgun sequence 584
NZ_PKMZ01000035.1 Mangrovicella endophytica strain 5T4P-12-1 scaffold_34, whole genome shotgun sequence 1,165

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory