fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudotabrizicola formosa XJSP

Genome identifier: GCF_002900965.1

NCBI assembly name: ASM290096v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudotabrizicola, Pseudotabrizicola formosa

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudotabrizicola, Pseudotabrizicola formosa

Scaffolds: 14

Genes: 3,558 Protein-coding: 3,482 RNAs: 52 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_PJOM01000001.1 Pseudotabrizicola formosa strain XJSP contig1, whole genome shotgun sequence 812,613
NZ_PJOM01000002.1 Pseudotabrizicola formosa strain XJSP contig2, whole genome shotgun sequence 1,520,968
NZ_PJOM01000003.1 Pseudotabrizicola formosa strain XJSP contig3, whole genome shotgun sequence 572,286
NZ_PJOM01000004.1 Pseudotabrizicola formosa strain XJSP contig4, whole genome shotgun sequence 270,907
NZ_PJOM01000005.1 Pseudotabrizicola formosa strain XJSP contig5, whole genome shotgun sequence 221,990
NZ_PJOM01000006.1 Pseudotabrizicola formosa strain XJSP contig6, whole genome shotgun sequence 107,508
NZ_PJOM01000007.1 Pseudotabrizicola formosa strain XJSP contig7, whole genome shotgun sequence 96,234
NZ_PJOM01000008.1 Pseudotabrizicola formosa strain XJSP contig8, whole genome shotgun sequence 58,842
NZ_PJOM01000009.1 Pseudotabrizicola formosa strain XJSP contig9, whole genome shotgun sequence 23,388
NZ_PJOM01000010.1 Pseudotabrizicola formosa strain XJSP contig10, whole genome shotgun sequence 6,101
NZ_PJOM01000011.1 Pseudotabrizicola formosa strain XJSP contig11, whole genome shotgun sequence 5,629
NZ_PJOM01000012.1 Pseudotabrizicola formosa strain XJSP contig12, whole genome shotgun sequence 2,401
NZ_PJOM01000013.1 Pseudotabrizicola formosa strain XJSP contig13, whole genome shotgun sequence 2,296
NZ_PJOM01000014.1 Pseudotabrizicola formosa strain XJSP contig14, whole genome shotgun sequence 1,595

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory