fast.genomicscompare 6,575 genera of bacteria & archaea

 

Vallitalea_A okinawensis S15

Genome identifier: GCF_002964605.1

NCBI assembly name: ASM296460v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Vallitaleaceae_A, Vallitalea_A, Vallitalea_A okinawensis

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Vallitaleaceae, Vallitalea, Vallitalea okinawensis

Scaffolds: 58

Genes: 5,302 Protein-coding: 5,187 RNAs: 99 pseudogenes: 16

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KZ672986.1 Vallitalea okinawensis strain S15 Scaffold19, whole genome shotgun sequence 52,302
NZ_PQDH01000001.1 Vallitalea okinawensis strain S15 Contig1, whole genome shotgun sequence 1,118,193
NZ_PQDH01000002.1 Vallitalea okinawensis strain S15 Contig2, whole genome shotgun sequence 987,740
NZ_PQDH01000003.1 Vallitalea okinawensis strain S15 Contig3, whole genome shotgun sequence 720,795
NZ_PQDH01000004.1 Vallitalea okinawensis strain S15 Contig4, whole genome shotgun sequence 364,224
NZ_PQDH01000005.1 Vallitalea okinawensis strain S15 Contig5, whole genome shotgun sequence 353,763
NZ_PQDH01000006.1 Vallitalea okinawensis strain S15 Contig6, whole genome shotgun sequence 345,664
NZ_PQDH01000007.1 Vallitalea okinawensis strain S15 Contig7, whole genome shotgun sequence 329,854
NZ_PQDH01000008.1 Vallitalea okinawensis strain S15 Contig8, whole genome shotgun sequence 246,901
NZ_PQDH01000009.1 Vallitalea okinawensis strain S15 Contig9, whole genome shotgun sequence 245,230
NZ_PQDH01000010.1 Vallitalea okinawensis strain S15 Contig10, whole genome shotgun sequence 164,277
NZ_PQDH01000011.1 Vallitalea okinawensis strain S15 Contig11, whole genome shotgun sequence 103,863
NZ_PQDH01000012.1 Vallitalea okinawensis strain S15 Contig12, whole genome shotgun sequence 97,835
NZ_PQDH01000013.1 Vallitalea okinawensis strain S15 Contig13, whole genome shotgun sequence 93,567
NZ_PQDH01000014.1 Vallitalea okinawensis strain S15 Contig14, whole genome shotgun sequence 78,844
NZ_PQDH01000015.1 Vallitalea okinawensis strain S15 Contig15, whole genome shotgun sequence 67,920
NZ_PQDH01000016.1 Vallitalea okinawensis strain S15 Contig16, whole genome shotgun sequence 61,224
NZ_PQDH01000017.1 Vallitalea okinawensis strain S15 Contig17, whole genome shotgun sequence 58,999
NZ_PQDH01000018.1 Vallitalea okinawensis strain S15 Contig18, whole genome shotgun sequence 56,420
NZ_PQDH01000025.1 Vallitalea okinawensis strain S15 Contig25, whole genome shotgun sequence 47,914
NZ_PQDH01000026.1 Vallitalea okinawensis strain S15 Contig26, whole genome shotgun sequence 37,494
NZ_PQDH01000027.1 Vallitalea okinawensis strain S15 Contig27, whole genome shotgun sequence 30,697
NZ_PQDH01000028.1 Vallitalea okinawensis strain S15 Contig28, whole genome shotgun sequence 26,522
NZ_PQDH01000029.1 Vallitalea okinawensis strain S15 Contig29, whole genome shotgun sequence 23,845
NZ_PQDH01000030.1 Vallitalea okinawensis strain S15 Contig30, whole genome shotgun sequence 23,584
NZ_PQDH01000031.1 Vallitalea okinawensis strain S15 Contig31, whole genome shotgun sequence 14,761
NZ_PQDH01000032.1 Vallitalea okinawensis strain S15 Contig32, whole genome shotgun sequence 13,861
NZ_PQDH01000033.1 Vallitalea okinawensis strain S15 Contig33, whole genome shotgun sequence 13,260
NZ_PQDH01000034.1 Vallitalea okinawensis strain S15 Contig34, whole genome shotgun sequence 7,741
NZ_PQDH01000035.1 Vallitalea okinawensis strain S15 Contig35, whole genome shotgun sequence 7,226
NZ_PQDH01000036.1 Vallitalea okinawensis strain S15 Contig36, whole genome shotgun sequence 6,038
NZ_PQDH01000037.1 Vallitalea okinawensis strain S15 Contig37, whole genome shotgun sequence 5,696
NZ_PQDH01000038.1 Vallitalea okinawensis strain S15 Contig38, whole genome shotgun sequence 4,856
NZ_PQDH01000039.1 Vallitalea okinawensis strain S15 Contig39, whole genome shotgun sequence 4,536
NZ_PQDH01000040.1 Vallitalea okinawensis strain S15 Contig40, whole genome shotgun sequence 4,188
NZ_PQDH01000041.1 Vallitalea okinawensis strain S15 Contig41, whole genome shotgun sequence 4,185
NZ_PQDH01000042.1 Vallitalea okinawensis strain S15 Contig42, whole genome shotgun sequence 3,727
NZ_PQDH01000043.1 Vallitalea okinawensis strain S15 Contig43, whole genome shotgun sequence 3,454
NZ_PQDH01000044.1 Vallitalea okinawensis strain S15 Contig44, whole genome shotgun sequence 3,227
NZ_PQDH01000045.1 Vallitalea okinawensis strain S15 Contig45, whole genome shotgun sequence 3,035
NZ_PQDH01000046.1 Vallitalea okinawensis strain S15 Contig46, whole genome shotgun sequence 2,674
NZ_PQDH01000047.1 Vallitalea okinawensis strain S15 Contig47, whole genome shotgun sequence 1,844
NZ_PQDH01000048.1 Vallitalea okinawensis strain S15 Contig48, whole genome shotgun sequence 1,826
NZ_PQDH01000049.1 Vallitalea okinawensis strain S15 Contig49, whole genome shotgun sequence 1,595
NZ_PQDH01000050.1 Vallitalea okinawensis strain S15 Contig50, whole genome shotgun sequence 1,500
NZ_PQDH01000051.1 Vallitalea okinawensis strain S15 Contig51, whole genome shotgun sequence 1,442
NZ_PQDH01000052.1 Vallitalea okinawensis strain S15 Contig52, whole genome shotgun sequence 1,244
NZ_PQDH01000053.1 Vallitalea okinawensis strain S15 Contig53, whole genome shotgun sequence 1,212
NZ_PQDH01000054.1 Vallitalea okinawensis strain S15 Contig54, whole genome shotgun sequence 1,113
NZ_PQDH01000055.1 Vallitalea okinawensis strain S15 Contig55, whole genome shotgun sequence 1,028
NZ_PQDH01000056.1 Vallitalea okinawensis strain S15 Contig56, whole genome shotgun sequence 1,013
NZ_PQDH01000057.1 Vallitalea okinawensis strain S15 Contig57, whole genome shotgun sequence 935
NZ_PQDH01000058.1 Vallitalea okinawensis strain S15 Contig58, whole genome shotgun sequence 893
NZ_PQDH01000059.1 Vallitalea okinawensis strain S15 Contig59, whole genome shotgun sequence 849
NZ_PQDH01000060.1 Vallitalea okinawensis strain S15 Contig60, whole genome shotgun sequence 795
NZ_PQDH01000061.1 Vallitalea okinawensis strain S15 Contig61, whole genome shotgun sequence 591
NZ_PQDH01000062.1 Vallitalea okinawensis strain S15 Contig62, whole genome shotgun sequence 572
NZ_PQDH01000063.1 Vallitalea okinawensis strain S15 Contig63, whole genome shotgun sequence 531

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory