fast.genomicscompare 6,575 genera of bacteria & archaea

 

Paracoccus methylarcula VKM B-2159

Genome identifier: GCF_003007735.2

NCBI assembly name: ASM300773v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Paracoccus, Paracoccus methylarcula

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Paracoccus, Paracoccus methylarcula

Scaffolds: 28

Genes: 4,161 Protein-coding: 3,820 RNAs: 49 pseudogenes: 292

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_PXNQ02000001.1 Paracoccus methylarcula strain VKM B-2159 contig00001, whole genome shotgun sequence 692,839
NZ_PXNQ02000002.1 Paracoccus methylarcula strain VKM B-2159 contig00002, whole genome shotgun sequence 484,676
NZ_PXNQ02000003.1 Paracoccus methylarcula strain VKM B-2159 contig00003, whole genome shotgun sequence 413,599
NZ_PXNQ02000004.1 Paracoccus methylarcula strain VKM B-2159 contig00004, whole genome shotgun sequence 300,315
NZ_PXNQ02000005.1 Paracoccus methylarcula strain VKM B-2159 contig00005, whole genome shotgun sequence 300,031
NZ_PXNQ02000006.1 Paracoccus methylarcula strain VKM B-2159 contig00006, whole genome shotgun sequence 274,298
NZ_PXNQ02000007.1 Paracoccus methylarcula strain VKM B-2159 contig00007, whole genome shotgun sequence 262,531
NZ_PXNQ02000008.1 Paracoccus methylarcula strain VKM B-2159 contig00008, whole genome shotgun sequence 254,292
NZ_PXNQ02000009.1 Paracoccus methylarcula strain VKM B-2159 contig00009, whole genome shotgun sequence 204,117
NZ_PXNQ02000010.1 Paracoccus methylarcula strain VKM B-2159 contig00010, whole genome shotgun sequence 198,781
NZ_PXNQ02000011.1 Paracoccus methylarcula strain VKM B-2159 contig00011, whole genome shotgun sequence 188,580
NZ_PXNQ02000012.1 Paracoccus methylarcula strain VKM B-2159 contig00012, whole genome shotgun sequence 176,819
NZ_PXNQ02000013.1 Paracoccus methylarcula strain VKM B-2159 contig00013, whole genome shotgun sequence 109,843
NZ_PXNQ02000014.1 Paracoccus methylarcula strain VKM B-2159 contig00014, whole genome shotgun sequence 102,211
NZ_PXNQ02000015.1 Paracoccus methylarcula strain VKM B-2159 contig00015, whole genome shotgun sequence 81,960
NZ_PXNQ02000016.1 Paracoccus methylarcula strain VKM B-2159 contig00016, whole genome shotgun sequence 54,710
NZ_PXNQ02000017.1 Paracoccus methylarcula strain VKM B-2159 contig00017, whole genome shotgun sequence 34,714
NZ_PXNQ02000018.1 Paracoccus methylarcula strain VKM B-2159 contig00018, whole genome shotgun sequence 22,083
NZ_PXNQ02000019.1 Paracoccus methylarcula strain VKM B-2159 contig00019, whole genome shotgun sequence 18,362
NZ_PXNQ02000020.1 Paracoccus methylarcula strain VKM B-2159 contig00020, whole genome shotgun sequence 18,289
NZ_PXNQ02000021.1 Paracoccus methylarcula strain VKM B-2159 contig00021, whole genome shotgun sequence 16,906
NZ_PXNQ02000022.1 Paracoccus methylarcula strain VKM B-2159 contig00022, whole genome shotgun sequence 10,014
NZ_PXNQ02000023.1 Paracoccus methylarcula strain VKM B-2159 contig00023, whole genome shotgun sequence 5,750
NZ_PXNQ02000024.1 Paracoccus methylarcula strain VKM B-2159 contig00024, whole genome shotgun sequence 4,150
NZ_PXNQ02000025.1 Paracoccus methylarcula strain VKM B-2159 contig00025, whole genome shotgun sequence 1,227
NZ_PXNQ02000026.1 Paracoccus methylarcula strain VKM B-2159 contig00026, whole genome shotgun sequence 820
NZ_PXNQ02000027.1 Paracoccus methylarcula strain VKM B-2159 contig00027, whole genome shotgun sequence 344
NZ_PXNQ02000028.1 Paracoccus methylarcula strain VKM B-2159 contig00028, whole genome shotgun sequence 297

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory