fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pukyongiella litopenaei SH-1

Genome identifier: GCF_003008555.2

NCBI assembly name: ASM300855v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pukyongiella, Pukyongiella litopenaei

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pukyongiella, Pukyongiella litopenaei

Scaffolds: 6

Genes: 4,187 Protein-coding: 4,053 RNAs: 48 pseudogenes: 86

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP027665.1 Pukyongiella litopenaei strain SH-1 chromosome, complete genome 3,892,138
NZ_CP043619.1 Pukyongiella litopenaei strain SH-1 plasmid p1, complete sequence 167,434
NZ_CP043620.1 Pukyongiella litopenaei strain SH-1 plasmid p2, complete sequence 78,245
NZ_CP043621.1 Pukyongiella litopenaei strain SH-1 plasmid p3, complete sequence 67,363
NZ_CP043622.1 Pukyongiella litopenaei strain SH-1 plasmid p4, complete sequence 41,166
NZ_CP043623.1 Pukyongiella litopenaei strain SH-1 plasmid p5, complete sequence 16,620

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory