fast.genomicscompare 6,575 genera of bacteria & archaea

 

Allosphingosinicella vermicomposti KCTC 22446

Genome identifier: GCF_003012815.1

NCBI assembly name: ASM301281v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Allosphingosinicella, Allosphingosinicella vermicomposti

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Allosphingosinicella, Allosphingosinicella vermicomposti

Scaffolds: 6

Genes: 2,473 Protein-coding: 2,401 RNAs: 50 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_PXYJ01000001.1 Allosphingosinicella vermicomposti strain KCTC 22446 ZB100000, whole genome shotgun sequence 1,212,955
NZ_PXYJ01000002.1 Allosphingosinicella vermicomposti strain KCTC 22446 ZB100001, whole genome shotgun sequence 580,195
NZ_PXYJ01000003.1 Allosphingosinicella vermicomposti strain KCTC 22446 ZB100002, whole genome shotgun sequence 494,371
NZ_PXYJ01000004.1 Allosphingosinicella vermicomposti strain KCTC 22446 ZB100003, whole genome shotgun sequence 217,851
NZ_PXYJ01000005.1 Allosphingosinicella vermicomposti strain KCTC 22446 ZB100004, whole genome shotgun sequence 2,055
NZ_PXYJ01000006.1 Allosphingosinicella vermicomposti strain KCTC 22446 ZB100005, whole genome shotgun sequence 252

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory