fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_H oleivorans FW-11

Genome identifier: GCF_003050615.1

NCBI assembly name: ASM305061v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_H, Sphingomonas_H oleivorans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas oleivorans

Scaffolds: 19

Genes: 3,696 Protein-coding: 3,583 RNAs: 51 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_NWBU01000001.1 Sphingomonas oleivorans strain FW-11 C115, whole genome shotgun sequence 5,565
NZ_NWBU01000002.1 Sphingomonas oleivorans strain FW-11 C105, whole genome shotgun sequence 1,210
NZ_NWBU01000003.1 Sphingomonas oleivorans strain FW-11 C129, whole genome shotgun sequence 23,449
NZ_NWBU01000004.1 Sphingomonas oleivorans strain FW-11 scaffold6, whole genome shotgun sequence 1,065,876
NZ_NWBU01000005.1 Sphingomonas oleivorans strain FW-11 scaffold5, whole genome shotgun sequence 464,715
NZ_NWBU01000006.1 Sphingomonas oleivorans strain FW-11 C153, whole genome shotgun sequence 129,604
NZ_NWBU01000007.1 Sphingomonas oleivorans strain FW-11 C175, whole genome shotgun sequence 320,418
NZ_NWBU01000008.1 Sphingomonas oleivorans strain FW-11 C119, whole genome shotgun sequence 11,808
NZ_NWBU01000009.1 Sphingomonas oleivorans strain FW-11 scaffold2, whole genome shotgun sequence 342,070
NZ_NWBU01000010.1 Sphingomonas oleivorans strain FW-11 scaffold4, whole genome shotgun sequence 666,956
NZ_NWBU01000011.1 Sphingomonas oleivorans strain FW-11 scaffold3, whole genome shotgun sequence 87,784
NZ_NWBU01000012.1 Sphingomonas oleivorans strain FW-11 C127, whole genome shotgun sequence 22,048
NZ_NWBU01000013.1 Sphingomonas oleivorans strain FW-11 C101, whole genome shotgun sequence 1,042
NZ_NWBU01000014.1 Sphingomonas oleivorans strain FW-11 C133, whole genome shotgun sequence 25,951
NZ_NWBU01000015.1 Sphingomonas oleivorans strain FW-11 C155, whole genome shotgun sequence 135,157
NZ_NWBU01000016.1 Sphingomonas oleivorans strain FW-11 C161, whole genome shotgun sequence 159,083
NZ_NWBU01000017.1 Sphingomonas oleivorans strain FW-11 scaffold1, whole genome shotgun sequence 178,587
NZ_NWBU01000018.1 Sphingomonas oleivorans strain FW-11 C171, whole genome shotgun sequence 231,493
NZ_NWBU01000019.1 Sphingomonas oleivorans strain FW-11 C103, whole genome shotgun sequence 1,062

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory