fast.genomicscompare 6,575 genera of bacteria & archaea

 

Allosediminivita pacifica DSM 29329

Genome identifier: GCF_003054175.1

NCBI assembly name: ASM305417v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Allosediminivita, Allosediminivita pacifica

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Allosediminivita, Allosediminivita pacifica

Scaffolds: 98

Genes: 4,675 Protein-coding: 4,561 RNAs: 51 pseudogenes: 63

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QBKN01000001.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_101, whole genome shotgun sequence 346,036
NZ_QBKN01000002.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_102, whole genome shotgun sequence 282,188
NZ_QBKN01000003.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_103, whole genome shotgun sequence 229,597
NZ_QBKN01000004.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_104, whole genome shotgun sequence 217,395
NZ_QBKN01000005.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_105, whole genome shotgun sequence 198,919
NZ_QBKN01000006.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_106, whole genome shotgun sequence 188,462
NZ_QBKN01000007.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_107, whole genome shotgun sequence 186,749
NZ_QBKN01000008.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_108, whole genome shotgun sequence 158,054
NZ_QBKN01000009.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_109, whole genome shotgun sequence 146,206
NZ_QBKN01000010.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_110, whole genome shotgun sequence 146,040
NZ_QBKN01000011.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_111, whole genome shotgun sequence 145,424
NZ_QBKN01000012.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_112, whole genome shotgun sequence 143,189
NZ_QBKN01000013.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_113, whole genome shotgun sequence 131,377
NZ_QBKN01000014.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_114, whole genome shotgun sequence 124,624
NZ_QBKN01000015.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_115, whole genome shotgun sequence 120,208
NZ_QBKN01000016.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_116, whole genome shotgun sequence 116,214
NZ_QBKN01000017.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_117, whole genome shotgun sequence 109,554
NZ_QBKN01000018.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_118, whole genome shotgun sequence 104,082
NZ_QBKN01000019.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_119, whole genome shotgun sequence 101,819
NZ_QBKN01000020.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_120, whole genome shotgun sequence 98,059
NZ_QBKN01000021.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_121, whole genome shotgun sequence 92,274
NZ_QBKN01000022.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_122, whole genome shotgun sequence 90,425
NZ_QBKN01000023.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_123, whole genome shotgun sequence 88,037
NZ_QBKN01000024.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_124, whole genome shotgun sequence 83,180
NZ_QBKN01000025.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_125, whole genome shotgun sequence 82,889
NZ_QBKN01000026.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_126, whole genome shotgun sequence 71,793
NZ_QBKN01000027.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_127, whole genome shotgun sequence 67,443
NZ_QBKN01000028.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_128, whole genome shotgun sequence 61,989
NZ_QBKN01000029.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_129, whole genome shotgun sequence 60,355
NZ_QBKN01000030.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_130, whole genome shotgun sequence 54,575
NZ_QBKN01000031.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_131, whole genome shotgun sequence 51,239
NZ_QBKN01000032.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_132, whole genome shotgun sequence 47,840
NZ_QBKN01000033.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_133, whole genome shotgun sequence 46,123
NZ_QBKN01000034.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_134, whole genome shotgun sequence 45,946
NZ_QBKN01000035.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_135, whole genome shotgun sequence 45,246
NZ_QBKN01000036.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_136, whole genome shotgun sequence 43,412
NZ_QBKN01000037.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_137, whole genome shotgun sequence 33,171
NZ_QBKN01000038.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_138, whole genome shotgun sequence 32,540
NZ_QBKN01000039.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_139, whole genome shotgun sequence 28,644
NZ_QBKN01000040.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_140, whole genome shotgun sequence 25,691
NZ_QBKN01000041.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_141, whole genome shotgun sequence 21,891
NZ_QBKN01000042.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_142, whole genome shotgun sequence 21,753
NZ_QBKN01000043.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_143, whole genome shotgun sequence 18,735
NZ_QBKN01000044.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_144, whole genome shotgun sequence 17,721
NZ_QBKN01000045.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_145, whole genome shotgun sequence 17,287
NZ_QBKN01000046.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_146, whole genome shotgun sequence 16,636
NZ_QBKN01000047.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_147, whole genome shotgun sequence 16,463
NZ_QBKN01000048.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_148, whole genome shotgun sequence 16,333
NZ_QBKN01000049.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_149, whole genome shotgun sequence 15,632
NZ_QBKN01000050.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_150, whole genome shotgun sequence 15,207
NZ_QBKN01000051.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_151, whole genome shotgun sequence 13,201
NZ_QBKN01000052.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_152, whole genome shotgun sequence 12,863
NZ_QBKN01000053.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_153, whole genome shotgun sequence 12,695
NZ_QBKN01000054.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_154, whole genome shotgun sequence 11,742
NZ_QBKN01000055.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_155, whole genome shotgun sequence 11,585
NZ_QBKN01000056.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_156, whole genome shotgun sequence 11,045
NZ_QBKN01000057.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_157, whole genome shotgun sequence 9,780
NZ_QBKN01000058.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_158, whole genome shotgun sequence 9,531
NZ_QBKN01000059.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_159, whole genome shotgun sequence 8,816
NZ_QBKN01000060.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_160, whole genome shotgun sequence 8,760
NZ_QBKN01000061.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_161, whole genome shotgun sequence 7,856
NZ_QBKN01000062.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_162, whole genome shotgun sequence 7,559
NZ_QBKN01000063.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_163, whole genome shotgun sequence 6,982
NZ_QBKN01000064.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_164, whole genome shotgun sequence 6,948
NZ_QBKN01000065.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_165, whole genome shotgun sequence 5,802
NZ_QBKN01000066.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_166, whole genome shotgun sequence 4,387
NZ_QBKN01000067.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_167, whole genome shotgun sequence 4,206
NZ_QBKN01000068.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_168, whole genome shotgun sequence 4,161
NZ_QBKN01000069.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_169, whole genome shotgun sequence 3,859
NZ_QBKN01000070.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_170, whole genome shotgun sequence 3,783
NZ_QBKN01000071.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_171, whole genome shotgun sequence 3,690
NZ_QBKN01000072.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_172, whole genome shotgun sequence 3,483
NZ_QBKN01000073.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_173, whole genome shotgun sequence 3,392
NZ_QBKN01000074.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_174, whole genome shotgun sequence 2,919
NZ_QBKN01000075.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_175, whole genome shotgun sequence 2,834
NZ_QBKN01000076.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_176, whole genome shotgun sequence 2,655
NZ_QBKN01000077.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_177, whole genome shotgun sequence 2,497
NZ_QBKN01000078.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_178, whole genome shotgun sequence 2,483
NZ_QBKN01000079.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_179, whole genome shotgun sequence 2,479
NZ_QBKN01000080.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_180, whole genome shotgun sequence 2,219
NZ_QBKN01000081.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_181, whole genome shotgun sequence 2,096
NZ_QBKN01000082.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_182, whole genome shotgun sequence 1,965
NZ_QBKN01000083.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_183, whole genome shotgun sequence 1,909
NZ_QBKN01000084.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_184, whole genome shotgun sequence 1,798
NZ_QBKN01000085.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_185, whole genome shotgun sequence 1,778
NZ_QBKN01000086.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_186, whole genome shotgun sequence 1,630
NZ_QBKN01000087.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_187, whole genome shotgun sequence 1,422
NZ_QBKN01000088.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_188, whole genome shotgun sequence 1,416
NZ_QBKN01000089.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_189, whole genome shotgun sequence 1,401
NZ_QBKN01000090.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_190, whole genome shotgun sequence 1,383
NZ_QBKN01000091.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_191, whole genome shotgun sequence 1,363
NZ_QBKN01000092.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_192, whole genome shotgun sequence 1,251
NZ_QBKN01000093.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_193, whole genome shotgun sequence 1,220
NZ_QBKN01000094.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_194, whole genome shotgun sequence 1,203
NZ_QBKN01000095.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_195, whole genome shotgun sequence 1,180
NZ_QBKN01000096.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_196, whole genome shotgun sequence 1,140
NZ_QBKN01000097.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_197, whole genome shotgun sequence 1,046
NZ_QBKN01000098.1 Allosediminivita pacifica strain DSM 29329 Ga0196855_198, whole genome shotgun sequence 1,029

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory