fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thalassorhabdomicrobium marinisediminis BH-SD16

Genome identifier: GCF_003072065.1

NCBI assembly name: ASM307206v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Thalassorhabdomicrobium, Thalassorhabdomicrobium marinisediminis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Thalassorhabdomicrobium, Thalassorhabdomicrobium marinisediminis

Scaffolds: 38

Genes: 3,361 Protein-coding: 3,266 RNAs: 48 pseudogenes: 47

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QCYG01000001.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold1, whole genome shotgun sequence 496,793
NZ_QCYG01000002.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold2, whole genome shotgun sequence 443,970
NZ_QCYG01000003.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold3, whole genome shotgun sequence 400,907
NZ_QCYG01000004.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold4, whole genome shotgun sequence 360,788
NZ_QCYG01000005.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold5, whole genome shotgun sequence 315,411
NZ_QCYG01000006.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold6, whole genome shotgun sequence 313,407
NZ_QCYG01000007.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold7, whole genome shotgun sequence 288,928
NZ_QCYG01000008.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold8, whole genome shotgun sequence 224,181
NZ_QCYG01000009.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold9, whole genome shotgun sequence 132,492
NZ_QCYG01000010.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold10, whole genome shotgun sequence 127,696
NZ_QCYG01000011.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold11, whole genome shotgun sequence 126,360
NZ_QCYG01000012.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold12, whole genome shotgun sequence 90,776
NZ_QCYG01000013.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold13, whole genome shotgun sequence 46,479
NZ_QCYG01000014.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold14, whole genome shotgun sequence 32,207
NZ_QCYG01000015.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold15, whole genome shotgun sequence 5,915
NZ_QCYG01000016.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold17, whole genome shotgun sequence 5,434
NZ_QCYG01000017.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold18, whole genome shotgun sequence 3,471
NZ_QCYG01000018.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold19, whole genome shotgun sequence 2,601
NZ_QCYG01000019.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold20, whole genome shotgun sequence 1,500
NZ_QCYG01000020.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold21, whole genome shotgun sequence 1,334
NZ_QCYG01000021.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold22, whole genome shotgun sequence 1,310
NZ_QCYG01000022.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold23, whole genome shotgun sequence 1,262
NZ_QCYG01000023.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold24, whole genome shotgun sequence 1,204
NZ_QCYG01000024.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold25, whole genome shotgun sequence 1,192
NZ_QCYG01000025.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold26, whole genome shotgun sequence 1,134
NZ_QCYG01000026.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold27, whole genome shotgun sequence 1,081
NZ_QCYG01000027.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold28, whole genome shotgun sequence 1,044
NZ_QCYG01000028.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold29, whole genome shotgun sequence 943
NZ_QCYG01000029.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold30, whole genome shotgun sequence 934
NZ_QCYG01000030.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold31, whole genome shotgun sequence 899
NZ_QCYG01000031.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold32, whole genome shotgun sequence 857
NZ_QCYG01000032.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold33, whole genome shotgun sequence 597
NZ_QCYG01000033.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold34, whole genome shotgun sequence 601
NZ_QCYG01000034.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold36, whole genome shotgun sequence 572
NZ_QCYG01000035.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold37, whole genome shotgun sequence 562
NZ_QCYG01000036.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold38, whole genome shotgun sequence 539
NZ_QCYG01000037.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold39, whole genome shotgun sequence 536
NZ_QCYG01000038.1 Thalassorhabdomicrobium marinisediminis strain BH-SD16 BH16_scaffold40, whole genome shotgun sequence 531

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory