fast.genomicscompare 6,575 genera of bacteria & archaea

 

Roseovarius sediminicola BH-SD19

Genome identifier: GCF_003072125.1

NCBI assembly name: ASM307212v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Roseovarius, Roseovarius sediminicola

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pelagivirga, Pelagivirga sediminicola

Scaffolds: 90

Genes: 3,948 Protein-coding: 3,795 RNAs: 55 pseudogenes: 98

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QCYH01000001.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold1, whole genome shotgun sequence 765,908
NZ_QCYH01000002.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold2, whole genome shotgun sequence 537,404
NZ_QCYH01000003.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold3, whole genome shotgun sequence 403,533
NZ_QCYH01000004.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold4, whole genome shotgun sequence 307,264
NZ_QCYH01000005.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold5, whole genome shotgun sequence 289,136
NZ_QCYH01000006.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold6, whole genome shotgun sequence 261,526
NZ_QCYH01000007.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold7, whole genome shotgun sequence 183,286
NZ_QCYH01000008.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold8, whole genome shotgun sequence 169,108
NZ_QCYH01000009.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold9, whole genome shotgun sequence 124,865
NZ_QCYH01000010.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold10, whole genome shotgun sequence 103,458
NZ_QCYH01000011.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold11, whole genome shotgun sequence 96,035
NZ_QCYH01000012.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold12, whole genome shotgun sequence 80,283
NZ_QCYH01000013.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold13, whole genome shotgun sequence 68,189
NZ_QCYH01000014.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold14, whole genome shotgun sequence 59,640
NZ_QCYH01000015.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold15, whole genome shotgun sequence 52,702
NZ_QCYH01000016.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold16, whole genome shotgun sequence 41,903
NZ_QCYH01000017.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold17, whole genome shotgun sequence 39,422
NZ_QCYH01000018.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold18, whole genome shotgun sequence 37,520
NZ_QCYH01000019.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold19, whole genome shotgun sequence 32,176
NZ_QCYH01000020.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold20, whole genome shotgun sequence 30,936
NZ_QCYH01000021.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold21, whole genome shotgun sequence 22,597
NZ_QCYH01000022.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold22, whole genome shotgun sequence 21,064
NZ_QCYH01000023.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold23, whole genome shotgun sequence 20,735
NZ_QCYH01000024.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold24, whole genome shotgun sequence 17,019
NZ_QCYH01000025.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold25, whole genome shotgun sequence 15,449
NZ_QCYH01000026.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold26, whole genome shotgun sequence 12,622
NZ_QCYH01000027.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold27, whole genome shotgun sequence 12,514
NZ_QCYH01000028.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold28, whole genome shotgun sequence 11,831
NZ_QCYH01000029.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold29, whole genome shotgun sequence 10,852
NZ_QCYH01000030.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold30, whole genome shotgun sequence 10,377
NZ_QCYH01000031.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold31, whole genome shotgun sequence 10,008
NZ_QCYH01000032.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold32, whole genome shotgun sequence 9,679
NZ_QCYH01000033.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold33, whole genome shotgun sequence 9,503
NZ_QCYH01000034.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold34, whole genome shotgun sequence 9,215
NZ_QCYH01000035.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold35, whole genome shotgun sequence 8,268
NZ_QCYH01000036.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold36, whole genome shotgun sequence 7,920
NZ_QCYH01000037.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold37, whole genome shotgun sequence 6,950
NZ_QCYH01000038.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold39, whole genome shotgun sequence 4,638
NZ_QCYH01000039.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold40, whole genome shotgun sequence 3,982
NZ_QCYH01000040.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold41, whole genome shotgun sequence 3,928
NZ_QCYH01000041.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold42, whole genome shotgun sequence 3,664
NZ_QCYH01000042.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold43, whole genome shotgun sequence 3,276
NZ_QCYH01000043.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold44, whole genome shotgun sequence 3,229
NZ_QCYH01000044.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold45, whole genome shotgun sequence 3,103
NZ_QCYH01000045.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold46, whole genome shotgun sequence 2,770
NZ_QCYH01000046.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold47, whole genome shotgun sequence 2,729
NZ_QCYH01000047.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold48, whole genome shotgun sequence 2,587
NZ_QCYH01000048.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold49, whole genome shotgun sequence 2,568
NZ_QCYH01000049.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold50, whole genome shotgun sequence 2,513
NZ_QCYH01000050.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold51, whole genome shotgun sequence 2,372
NZ_QCYH01000051.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold52, whole genome shotgun sequence 2,273
NZ_QCYH01000052.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold53, whole genome shotgun sequence 2,071
NZ_QCYH01000053.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold54, whole genome shotgun sequence 1,915
NZ_QCYH01000054.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold55, whole genome shotgun sequence 1,882
NZ_QCYH01000055.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold56, whole genome shotgun sequence 1,643
NZ_QCYH01000056.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold57, whole genome shotgun sequence 1,603
NZ_QCYH01000057.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold58, whole genome shotgun sequence 1,574
NZ_QCYH01000058.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold59, whole genome shotgun sequence 1,554
NZ_QCYH01000059.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold60, whole genome shotgun sequence 1,522
NZ_QCYH01000060.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold61, whole genome shotgun sequence 1,510
NZ_QCYH01000061.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold62, whole genome shotgun sequence 1,361
NZ_QCYH01000062.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold63, whole genome shotgun sequence 1,352
NZ_QCYH01000063.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold64, whole genome shotgun sequence 1,304
NZ_QCYH01000064.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold65, whole genome shotgun sequence 1,075
NZ_QCYH01000065.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold66, whole genome shotgun sequence 1,030
NZ_QCYH01000066.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold67, whole genome shotgun sequence 995
NZ_QCYH01000067.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold68, whole genome shotgun sequence 937
NZ_QCYH01000068.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold69, whole genome shotgun sequence 918
NZ_QCYH01000069.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold70, whole genome shotgun sequence 816
NZ_QCYH01000070.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold71, whole genome shotgun sequence 797
NZ_QCYH01000071.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold72, whole genome shotgun sequence 758
NZ_QCYH01000072.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold73, whole genome shotgun sequence 733
NZ_QCYH01000073.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold74, whole genome shotgun sequence 710
NZ_QCYH01000074.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold75, whole genome shotgun sequence 672
NZ_QCYH01000075.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold76, whole genome shotgun sequence 601
NZ_QCYH01000076.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold77, whole genome shotgun sequence 588
NZ_QCYH01000077.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold79, whole genome shotgun sequence 570
NZ_QCYH01000078.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold80, whole genome shotgun sequence 564
NZ_QCYH01000079.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold81, whole genome shotgun sequence 543
NZ_QCYH01000080.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold82, whole genome shotgun sequence 540
NZ_QCYH01000081.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold83, whole genome shotgun sequence 528
NZ_QCYH01000082.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold84, whole genome shotgun sequence 522
NZ_QCYH01000083.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold85, whole genome shotgun sequence 522
NZ_QCYH01000084.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold87, whole genome shotgun sequence 521
NZ_QCYH01000085.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold88, whole genome shotgun sequence 518
NZ_QCYH01000086.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold89, whole genome shotgun sequence 513
NZ_QCYH01000087.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold90, whole genome shotgun sequence 510
NZ_QCYH01000088.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold91, whole genome shotgun sequence 503
NZ_QCYH01000089.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold92, whole genome shotgun sequence 503
NZ_QCYH01000090.1 Pelagivirga sediminicola strain BH-SD19 BH19_scaffold93, whole genome shotgun sequence 500

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory