fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pararhodobacter aggregans D1-19

Genome identifier: GCF_003075525.1

NCBI assembly name: ASM307552v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pararhodobacter, Pararhodobacter aggregans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pararhodobacter, Pararhodobacter aggregans

Scaffolds: 32

Genes: 5,016 Protein-coding: 4,926 RNAs: 54 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QDDR01000001.1 Pararhodobacter aggregans strain D1-19 Contig1, whole genome shotgun sequence 841,281
NZ_QDDR01000002.1 Pararhodobacter aggregans strain D1-19 Contig2, whole genome shotgun sequence 601,884
NZ_QDDR01000003.1 Pararhodobacter aggregans strain D1-19 Contig3, whole genome shotgun sequence 400,202
NZ_QDDR01000004.1 Pararhodobacter aggregans strain D1-19 Contig4, whole genome shotgun sequence 330,238
NZ_QDDR01000005.1 Pararhodobacter aggregans strain D1-19 Contig5, whole genome shotgun sequence 306,987
NZ_QDDR01000006.1 Pararhodobacter aggregans strain D1-19 Contig6, whole genome shotgun sequence 299,118
NZ_QDDR01000007.1 Pararhodobacter aggregans strain D1-19 Contig7, whole genome shotgun sequence 285,791
NZ_QDDR01000008.1 Pararhodobacter aggregans strain D1-19 Contig8, whole genome shotgun sequence 271,142
NZ_QDDR01000009.1 Pararhodobacter aggregans strain D1-19 Contig9, whole genome shotgun sequence 266,162
NZ_QDDR01000010.1 Pararhodobacter aggregans strain D1-19 Contig10, whole genome shotgun sequence 208,813
NZ_QDDR01000011.1 Pararhodobacter aggregans strain D1-19 Contig11, whole genome shotgun sequence 196,307
NZ_QDDR01000012.1 Pararhodobacter aggregans strain D1-19 Contig12, whole genome shotgun sequence 138,167
NZ_QDDR01000013.1 Pararhodobacter aggregans strain D1-19 Contig13, whole genome shotgun sequence 134,980
NZ_QDDR01000014.1 Pararhodobacter aggregans strain D1-19 Contig14, whole genome shotgun sequence 127,779
NZ_QDDR01000015.1 Pararhodobacter aggregans strain D1-19 Contig15, whole genome shotgun sequence 119,733
NZ_QDDR01000016.1 Pararhodobacter aggregans strain D1-19 Contig16, whole genome shotgun sequence 109,235
NZ_QDDR01000017.1 Pararhodobacter aggregans strain D1-19 Contig17, whole genome shotgun sequence 97,993
NZ_QDDR01000018.1 Pararhodobacter aggregans strain D1-19 Contig18, whole genome shotgun sequence 79,858
NZ_QDDR01000019.1 Pararhodobacter aggregans strain D1-19 Contig19, whole genome shotgun sequence 71,021
NZ_QDDR01000020.1 Pararhodobacter aggregans strain D1-19 Contig20, whole genome shotgun sequence 43,910
NZ_QDDR01000021.1 Pararhodobacter aggregans strain D1-19 Contig21, whole genome shotgun sequence 31,942
NZ_QDDR01000022.1 Pararhodobacter aggregans strain D1-19 Contig22, whole genome shotgun sequence 29,837
NZ_QDDR01000023.1 Pararhodobacter aggregans strain D1-19 Contig23, whole genome shotgun sequence 29,260
NZ_QDDR01000024.1 Pararhodobacter aggregans strain D1-19 Contig24, whole genome shotgun sequence 16,411
NZ_QDDR01000025.1 Pararhodobacter aggregans strain D1-19 Contig25, whole genome shotgun sequence 13,621
NZ_QDDR01000026.1 Pararhodobacter aggregans strain D1-19 Contig26, whole genome shotgun sequence 10,449
NZ_QDDR01000027.1 Pararhodobacter aggregans strain D1-19 Contig27, whole genome shotgun sequence 5,710
NZ_QDDR01000028.1 Pararhodobacter aggregans strain D1-19 Contig28, whole genome shotgun sequence 3,916
NZ_QDDR01000029.1 Pararhodobacter aggregans strain D1-19 Contig29, whole genome shotgun sequence 3,165
NZ_QDDR01000030.1 Pararhodobacter aggregans strain D1-19 Contig30, whole genome shotgun sequence 2,199
NZ_QDDR01000031.1 Pararhodobacter aggregans strain D1-19 Contig31, whole genome shotgun sequence 1,644
NZ_QDDR01000032.1 Pararhodobacter aggregans strain D1-19 Contig32, whole genome shotgun sequence 1,187

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory