fast.genomicscompare 6,575 genera of bacteria & archaea

 

Silicimonas algicola DSM 103371

Genome identifier: GCF_003148765.1

NCBI assembly name: ASM314876v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Silicimonas, Silicimonas algicola

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Silicimonas, Silicimonas algicola

Scaffolds: 29

Genes: 4,388 Protein-coding: 4,270 RNAs: 48 pseudogenes: 70

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QGGV01000001.1 Silicimonas algicola strain DSM 103371 Ga0215722_101, whole genome shotgun sequence 891,636
NZ_QGGV01000002.1 Silicimonas algicola strain DSM 103371 Ga0215722_102, whole genome shotgun sequence 619,163
NZ_QGGV01000003.1 Silicimonas algicola strain DSM 103371 Ga0215722_103, whole genome shotgun sequence 509,967
NZ_QGGV01000004.1 Silicimonas algicola strain DSM 103371 Ga0215722_104, whole genome shotgun sequence 356,740
NZ_QGGV01000005.1 Silicimonas algicola strain DSM 103371 Ga0215722_105, whole genome shotgun sequence 305,148
NZ_QGGV01000006.1 Silicimonas algicola strain DSM 103371 Ga0215722_106, whole genome shotgun sequence 257,845
NZ_QGGV01000007.1 Silicimonas algicola strain DSM 103371 Ga0215722_107, whole genome shotgun sequence 205,239
NZ_QGGV01000008.1 Silicimonas algicola strain DSM 103371 Ga0215722_108, whole genome shotgun sequence 185,852
NZ_QGGV01000009.1 Silicimonas algicola strain DSM 103371 Ga0215722_109, whole genome shotgun sequence 185,816
NZ_QGGV01000010.1 Silicimonas algicola strain DSM 103371 Ga0215722_110, whole genome shotgun sequence 166,726
NZ_QGGV01000011.1 Silicimonas algicola strain DSM 103371 Ga0215722_111, whole genome shotgun sequence 151,609
NZ_QGGV01000012.1 Silicimonas algicola strain DSM 103371 Ga0215722_112, whole genome shotgun sequence 135,469
NZ_QGGV01000013.1 Silicimonas algicola strain DSM 103371 Ga0215722_113, whole genome shotgun sequence 127,091
NZ_QGGV01000014.1 Silicimonas algicola strain DSM 103371 Ga0215722_114, whole genome shotgun sequence 84,456
NZ_QGGV01000015.1 Silicimonas algicola strain DSM 103371 Ga0215722_115, whole genome shotgun sequence 63,516
NZ_QGGV01000016.1 Silicimonas algicola strain DSM 103371 Ga0215722_116, whole genome shotgun sequence 24,741
NZ_QGGV01000017.1 Silicimonas algicola strain DSM 103371 Ga0215722_117, whole genome shotgun sequence 23,983
NZ_QGGV01000018.1 Silicimonas algicola strain DSM 103371 Ga0215722_118, whole genome shotgun sequence 10,145
NZ_QGGV01000019.1 Silicimonas algicola strain DSM 103371 Ga0215722_119, whole genome shotgun sequence 6,887
NZ_QGGV01000020.1 Silicimonas algicola strain DSM 103371 Ga0215722_120, whole genome shotgun sequence 6,498
NZ_QGGV01000021.1 Silicimonas algicola strain DSM 103371 Ga0215722_121, whole genome shotgun sequence 6,259
NZ_QGGV01000022.1 Silicimonas algicola strain DSM 103371 Ga0215722_122, whole genome shotgun sequence 2,861
NZ_QGGV01000023.1 Silicimonas algicola strain DSM 103371 Ga0215722_123, whole genome shotgun sequence 2,107
NZ_QGGV01000024.1 Silicimonas algicola strain DSM 103371 Ga0215722_124, whole genome shotgun sequence 2,084
NZ_QGGV01000025.1 Silicimonas algicola strain DSM 103371 Ga0215722_125, whole genome shotgun sequence 1,387
NZ_QGGV01000026.1 Silicimonas algicola strain DSM 103371 Ga0215722_126, whole genome shotgun sequence 1,222
NZ_QGGV01000027.1 Silicimonas algicola strain DSM 103371 Ga0215722_127, whole genome shotgun sequence 1,170
NZ_QGGV01000028.1 Silicimonas algicola strain DSM 103371 Ga0215722_128, whole genome shotgun sequence 1,079
NZ_QGGV01000029.1 Silicimonas algicola strain DSM 103371 Ga0215722_129, whole genome shotgun sequence 1,039

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory