fast.genomicscompare 6,575 genera of bacteria & archaea

 

Zavarzinia compransoris DSM 1231

Genome identifier: GCF_003173055.1

NCBI assembly name: ASM317305v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Zavarziniales, Zavarziniaceae, Zavarzinia, Zavarzinia compransoris

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Zavarziniaceae, Zavarzinia, Zavarzinia compransoris

Scaffolds: 17

Genes: 4,543 Protein-coding: 4,469 RNAs: 54 pseudogenes: 20

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QGLF01000001.1 Zavarzinia compransoris strain DSM 1231 DSM1231_1, whole genome shotgun sequence 1,195,345
NZ_QGLF01000002.1 Zavarzinia compransoris strain DSM 1231 DSM1231_2, whole genome shotgun sequence 1,036,323
NZ_QGLF01000003.1 Zavarzinia compransoris strain DSM 1231 DSM1231_3, whole genome shotgun sequence 669,422
NZ_QGLF01000004.1 Zavarzinia compransoris strain DSM 1231 DSM1231_4, whole genome shotgun sequence 589,574
NZ_QGLF01000005.1 Zavarzinia compransoris strain DSM 1231 DSM1231_5, whole genome shotgun sequence 578,200
NZ_QGLF01000006.1 Zavarzinia compransoris strain DSM 1231 DSM1231_6, whole genome shotgun sequence 215,073
NZ_QGLF01000007.1 Zavarzinia compransoris strain DSM 1231 DSM1231_7, whole genome shotgun sequence 187,541
NZ_QGLF01000008.1 Zavarzinia compransoris strain DSM 1231 DSM1231_8, whole genome shotgun sequence 187,023
NZ_QGLF01000009.1 Zavarzinia compransoris strain DSM 1231 DSM1231_9, whole genome shotgun sequence 42,732
NZ_QGLF01000010.1 Zavarzinia compransoris strain DSM 1231 DSM1231_10, whole genome shotgun sequence 25,136
NZ_QGLF01000011.1 Zavarzinia compransoris strain DSM 1231 DSM1231_11, whole genome shotgun sequence 18,146
NZ_QGLF01000012.1 Zavarzinia compransoris strain DSM 1231 DSM1231_12, whole genome shotgun sequence 2,927
NZ_QGLF01000013.1 Zavarzinia compransoris strain DSM 1231 DSM1231_13, whole genome shotgun sequence 2,909
NZ_QGLF01000014.1 Zavarzinia compransoris strain DSM 1231 DSM1231_14, whole genome shotgun sequence 2,616
NZ_QGLF01000015.1 Zavarzinia compransoris strain DSM 1231 DSM1231_15, whole genome shotgun sequence 1,942
NZ_QGLF01000016.1 Zavarzinia compransoris strain DSM 1231 DSM1231_16, whole genome shotgun sequence 1,553
NZ_QGLF01000017.1 Zavarzinia compransoris strain DSM 1231 DSM1231_17, whole genome shotgun sequence 1,077

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory