fast.genomicscompare 6,575 genera of bacteria & archaea

 

Hoeflea marina DSM 16791

Genome identifier: GCF_003182275.1

NCBI assembly name: ASM318227v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Hoeflea, Hoeflea marina

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Hoeflea, Hoeflea marina

Scaffolds: 21

Genes: 4,856 Protein-coding: 4,767 RNAs: 54 pseudogenes: 35

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QGTR01000001.1 Hoeflea marina strain DSM 16791 Ga0244531_101, whole genome shotgun sequence 1,454,605
NZ_QGTR01000002.1 Hoeflea marina strain DSM 16791 Ga0244531_102, whole genome shotgun sequence 1,026,206
NZ_QGTR01000003.1 Hoeflea marina strain DSM 16791 Ga0244531_103, whole genome shotgun sequence 911,015
NZ_QGTR01000004.1 Hoeflea marina strain DSM 16791 Ga0244531_104, whole genome shotgun sequence 600,165
NZ_QGTR01000005.1 Hoeflea marina strain DSM 16791 Ga0244531_105, whole genome shotgun sequence 353,933
NZ_QGTR01000006.1 Hoeflea marina strain DSM 16791 Ga0244531_106, whole genome shotgun sequence 350,853
NZ_QGTR01000007.1 Hoeflea marina strain DSM 16791 Ga0244531_107, whole genome shotgun sequence 199,314
NZ_QGTR01000008.1 Hoeflea marina strain DSM 16791 Ga0244531_108, whole genome shotgun sequence 102,864
NZ_QGTR01000009.1 Hoeflea marina strain DSM 16791 Ga0244531_109, whole genome shotgun sequence 69,492
NZ_QGTR01000010.1 Hoeflea marina strain DSM 16791 Ga0244531_110, whole genome shotgun sequence 52,711
NZ_QGTR01000011.1 Hoeflea marina strain DSM 16791 Ga0244531_111, whole genome shotgun sequence 34,202
NZ_QGTR01000012.1 Hoeflea marina strain DSM 16791 Ga0244531_112, whole genome shotgun sequence 28,185
NZ_QGTR01000013.1 Hoeflea marina strain DSM 16791 Ga0244531_113, whole genome shotgun sequence 25,689
NZ_QGTR01000014.1 Hoeflea marina strain DSM 16791 Ga0244531_114, whole genome shotgun sequence 22,760
NZ_QGTR01000015.1 Hoeflea marina strain DSM 16791 Ga0244531_115, whole genome shotgun sequence 14,640
NZ_QGTR01000016.1 Hoeflea marina strain DSM 16791 Ga0244531_116, whole genome shotgun sequence 6,225
NZ_QGTR01000017.1 Hoeflea marina strain DSM 16791 Ga0244531_117, whole genome shotgun sequence 2,697
NZ_QGTR01000018.1 Hoeflea marina strain DSM 16791 Ga0244531_118, whole genome shotgun sequence 2,228
NZ_QGTR01000019.1 Hoeflea marina strain DSM 16791 Ga0244531_119, whole genome shotgun sequence 1,975
NZ_QGTR01000020.1 Hoeflea marina strain DSM 16791 Ga0244531_120, whole genome shotgun sequence 1,115
NZ_QGTR01000021.1 Hoeflea marina strain DSM 16791 Ga0244531_121, whole genome shotgun sequence 1,091

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory