fast.genomicscompare 6,575 genera of bacteria & archaea

 

Litorivita pollutaquae FSX-11

Genome identifier: GCF_003205515.1

NCBI assembly name: ASM320551v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Litorivita, Litorivita pollutaquae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Litorivita, Litorivita pollutaquae

Scaffolds: 28

Genes: 3,243 Protein-coding: 3,167 RNAs: 49 pseudogenes: 27

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KZ826481.1 Litorivita pollutaquae strain FSX-11 Scaffold1, whole genome shotgun sequence 805,626
NZ_KZ826482.1 Litorivita pollutaquae strain FSX-11 Scaffold2, whole genome shotgun sequence 577,514
NZ_KZ826483.1 Litorivita pollutaquae strain FSX-11 Scaffold3, whole genome shotgun sequence 443,118
NZ_KZ826484.1 Litorivita pollutaquae strain FSX-11 Scaffold4, whole genome shotgun sequence 274,261
NZ_KZ826485.1 Litorivita pollutaquae strain FSX-11 Scaffold5, whole genome shotgun sequence 239,231
NZ_KZ826486.1 Litorivita pollutaquae strain FSX-11 Scaffold6, whole genome shotgun sequence 196,713
NZ_KZ826487.1 Litorivita pollutaquae strain FSX-11 Scaffold7, whole genome shotgun sequence 154,238
NZ_KZ826488.1 Litorivita pollutaquae strain FSX-11 Scaffold8, whole genome shotgun sequence 131,093
NZ_KZ826489.1 Litorivita pollutaquae strain FSX-11 Scaffold9, whole genome shotgun sequence 126,200
NZ_KZ826490.1 Litorivita pollutaquae strain FSX-11 Scaffold10, whole genome shotgun sequence 100,390
NZ_KZ826491.1 Litorivita pollutaquae strain FSX-11 Scaffold11, whole genome shotgun sequence 90,116
NZ_KZ826492.1 Litorivita pollutaquae strain FSX-11 Scaffold12, whole genome shotgun sequence 88,900
NZ_KZ826493.1 Litorivita pollutaquae strain FSX-11 Scaffold13, whole genome shotgun sequence 54,696
NZ_KZ826494.1 Litorivita pollutaquae strain FSX-11 Scaffold14, whole genome shotgun sequence 42,033
NZ_KZ826495.1 Litorivita pollutaquae strain FSX-11 Scaffold15, whole genome shotgun sequence 27,195
NZ_KZ826496.1 Litorivita pollutaquae strain FSX-11 Scaffold16, whole genome shotgun sequence 25,080
NZ_KZ826497.1 Litorivita pollutaquae strain FSX-11 Scaffold17, whole genome shotgun sequence 16,219
NZ_KZ826498.1 Litorivita pollutaquae strain FSX-11 Scaffold18, whole genome shotgun sequence 9,867
NZ_KZ826499.1 Litorivita pollutaquae strain FSX-11 Scaffold19, whole genome shotgun sequence 6,052
NZ_KZ826500.1 Litorivita pollutaquae strain FSX-11 Scaffold20, whole genome shotgun sequence 2,591
NZ_KZ826501.1 Litorivita pollutaquae strain FSX-11 Scaffold21, whole genome shotgun sequence 2,310
NZ_KZ826502.1 Litorivita pollutaquae strain FSX-11 Scaffold22, whole genome shotgun sequence 1,893
NZ_KZ826503.1 Litorivita pollutaquae strain FSX-11 Scaffold23, whole genome shotgun sequence 1,434
NZ_KZ826504.1 Litorivita pollutaquae strain FSX-11 Scaffold24, whole genome shotgun sequence 1,350
NZ_KZ826505.1 Litorivita pollutaquae strain FSX-11 Scaffold25, whole genome shotgun sequence 1,208
NZ_KZ826506.1 Litorivita pollutaquae strain FSX-11 Scaffold26, whole genome shotgun sequence 839
NZ_KZ826507.1 Litorivita pollutaquae strain FSX-11 Scaffold27, whole genome shotgun sequence 735
NZ_KZ826508.1 Litorivita pollutaquae strain FSX-11 Scaffold28, whole genome shotgun sequence 631

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory