fast.genomicscompare 6,575 genera of bacteria & archaea

 

Humitalea rosea DSM 24525

Genome identifier: GCF_003253705.1

NCBI assembly name: ASM325370v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Acetobacterales, Acetobacteraceae, Humitalea, Humitalea rosea

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Acetobacteraceae, Humitalea, Humitalea rosea

Scaffolds: 73

Genes: 4,745 Protein-coding: 4,626 RNAs: 53 pseudogenes: 66

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QKYU01000001.1 Humitalea rosea strain DSM 24525 Ga0183458_101, whole genome shotgun sequence 457,386
NZ_QKYU01000002.1 Humitalea rosea strain DSM 24525 Ga0183458_102, whole genome shotgun sequence 246,474
NZ_QKYU01000003.1 Humitalea rosea strain DSM 24525 Ga0183458_103, whole genome shotgun sequence 242,341
NZ_QKYU01000004.1 Humitalea rosea strain DSM 24525 Ga0183458_104, whole genome shotgun sequence 241,923
NZ_QKYU01000005.1 Humitalea rosea strain DSM 24525 Ga0183458_105, whole genome shotgun sequence 202,833
NZ_QKYU01000006.1 Humitalea rosea strain DSM 24525 Ga0183458_106, whole genome shotgun sequence 197,836
NZ_QKYU01000007.1 Humitalea rosea strain DSM 24525 Ga0183458_107, whole genome shotgun sequence 189,974
NZ_QKYU01000008.1 Humitalea rosea strain DSM 24525 Ga0183458_108, whole genome shotgun sequence 179,524
NZ_QKYU01000009.1 Humitalea rosea strain DSM 24525 Ga0183458_109, whole genome shotgun sequence 176,964
NZ_QKYU01000010.1 Humitalea rosea strain DSM 24525 Ga0183458_110, whole genome shotgun sequence 173,112
NZ_QKYU01000011.1 Humitalea rosea strain DSM 24525 Ga0183458_111, whole genome shotgun sequence 171,083
NZ_QKYU01000012.1 Humitalea rosea strain DSM 24525 Ga0183458_112, whole genome shotgun sequence 161,053
NZ_QKYU01000013.1 Humitalea rosea strain DSM 24525 Ga0183458_113, whole genome shotgun sequence 152,860
NZ_QKYU01000014.1 Humitalea rosea strain DSM 24525 Ga0183458_114, whole genome shotgun sequence 145,947
NZ_QKYU01000015.1 Humitalea rosea strain DSM 24525 Ga0183458_115, whole genome shotgun sequence 144,608
NZ_QKYU01000016.1 Humitalea rosea strain DSM 24525 Ga0183458_116, whole genome shotgun sequence 132,674
NZ_QKYU01000017.1 Humitalea rosea strain DSM 24525 Ga0183458_117, whole genome shotgun sequence 125,753
NZ_QKYU01000018.1 Humitalea rosea strain DSM 24525 Ga0183458_118, whole genome shotgun sequence 113,142
NZ_QKYU01000019.1 Humitalea rosea strain DSM 24525 Ga0183458_119, whole genome shotgun sequence 106,047
NZ_QKYU01000020.1 Humitalea rosea strain DSM 24525 Ga0183458_120, whole genome shotgun sequence 97,606
NZ_QKYU01000021.1 Humitalea rosea strain DSM 24525 Ga0183458_121, whole genome shotgun sequence 95,345
NZ_QKYU01000022.1 Humitalea rosea strain DSM 24525 Ga0183458_122, whole genome shotgun sequence 82,720
NZ_QKYU01000023.1 Humitalea rosea strain DSM 24525 Ga0183458_123, whole genome shotgun sequence 70,818
NZ_QKYU01000024.1 Humitalea rosea strain DSM 24525 Ga0183458_124, whole genome shotgun sequence 70,290
NZ_QKYU01000025.1 Humitalea rosea strain DSM 24525 Ga0183458_125, whole genome shotgun sequence 68,407
NZ_QKYU01000026.1 Humitalea rosea strain DSM 24525 Ga0183458_126, whole genome shotgun sequence 66,320
NZ_QKYU01000027.1 Humitalea rosea strain DSM 24525 Ga0183458_127, whole genome shotgun sequence 65,457
NZ_QKYU01000028.1 Humitalea rosea strain DSM 24525 Ga0183458_128, whole genome shotgun sequence 60,885
NZ_QKYU01000029.1 Humitalea rosea strain DSM 24525 Ga0183458_129, whole genome shotgun sequence 57,587
NZ_QKYU01000030.1 Humitalea rosea strain DSM 24525 Ga0183458_130, whole genome shotgun sequence 56,366
NZ_QKYU01000031.1 Humitalea rosea strain DSM 24525 Ga0183458_131, whole genome shotgun sequence 51,803
NZ_QKYU01000032.1 Humitalea rosea strain DSM 24525 Ga0183458_132, whole genome shotgun sequence 47,889
NZ_QKYU01000033.1 Humitalea rosea strain DSM 24525 Ga0183458_133, whole genome shotgun sequence 38,479
NZ_QKYU01000034.1 Humitalea rosea strain DSM 24525 Ga0183458_134, whole genome shotgun sequence 34,799
NZ_QKYU01000035.1 Humitalea rosea strain DSM 24525 Ga0183458_135, whole genome shotgun sequence 33,476
NZ_QKYU01000036.1 Humitalea rosea strain DSM 24525 Ga0183458_136, whole genome shotgun sequence 32,846
NZ_QKYU01000037.1 Humitalea rosea strain DSM 24525 Ga0183458_137, whole genome shotgun sequence 31,670
NZ_QKYU01000038.1 Humitalea rosea strain DSM 24525 Ga0183458_138, whole genome shotgun sequence 30,280
NZ_QKYU01000039.1 Humitalea rosea strain DSM 24525 Ga0183458_139, whole genome shotgun sequence 28,786
NZ_QKYU01000040.1 Humitalea rosea strain DSM 24525 Ga0183458_140, whole genome shotgun sequence 28,008
NZ_QKYU01000041.1 Humitalea rosea strain DSM 24525 Ga0183458_141, whole genome shotgun sequence 27,300
NZ_QKYU01000042.1 Humitalea rosea strain DSM 24525 Ga0183458_142, whole genome shotgun sequence 22,660
NZ_QKYU01000043.1 Humitalea rosea strain DSM 24525 Ga0183458_143, whole genome shotgun sequence 22,472
NZ_QKYU01000044.1 Humitalea rosea strain DSM 24525 Ga0183458_144, whole genome shotgun sequence 21,893
NZ_QKYU01000045.1 Humitalea rosea strain DSM 24525 Ga0183458_145, whole genome shotgun sequence 21,614
NZ_QKYU01000046.1 Humitalea rosea strain DSM 24525 Ga0183458_146, whole genome shotgun sequence 14,718
NZ_QKYU01000047.1 Humitalea rosea strain DSM 24525 Ga0183458_147, whole genome shotgun sequence 13,094
NZ_QKYU01000048.1 Humitalea rosea strain DSM 24525 Ga0183458_148, whole genome shotgun sequence 12,603
NZ_QKYU01000049.1 Humitalea rosea strain DSM 24525 Ga0183458_149, whole genome shotgun sequence 12,597
NZ_QKYU01000050.1 Humitalea rosea strain DSM 24525 Ga0183458_150, whole genome shotgun sequence 11,546
NZ_QKYU01000051.1 Humitalea rosea strain DSM 24525 Ga0183458_151, whole genome shotgun sequence 10,214
NZ_QKYU01000052.1 Humitalea rosea strain DSM 24525 Ga0183458_152, whole genome shotgun sequence 9,336
NZ_QKYU01000053.1 Humitalea rosea strain DSM 24525 Ga0183458_153, whole genome shotgun sequence 8,857
NZ_QKYU01000054.1 Humitalea rosea strain DSM 24525 Ga0183458_154, whole genome shotgun sequence 8,087
NZ_QKYU01000055.1 Humitalea rosea strain DSM 24525 Ga0183458_155, whole genome shotgun sequence 6,318
NZ_QKYU01000056.1 Humitalea rosea strain DSM 24525 Ga0183458_156, whole genome shotgun sequence 5,919
NZ_QKYU01000057.1 Humitalea rosea strain DSM 24525 Ga0183458_157, whole genome shotgun sequence 5,383
NZ_QKYU01000058.1 Humitalea rosea strain DSM 24525 Ga0183458_158, whole genome shotgun sequence 4,851
NZ_QKYU01000059.1 Humitalea rosea strain DSM 24525 Ga0183458_159, whole genome shotgun sequence 2,733
NZ_QKYU01000060.1 Humitalea rosea strain DSM 24525 Ga0183458_160, whole genome shotgun sequence 2,631
NZ_QKYU01000061.1 Humitalea rosea strain DSM 24525 Ga0183458_161, whole genome shotgun sequence 2,448
NZ_QKYU01000062.1 Humitalea rosea strain DSM 24525 Ga0183458_162, whole genome shotgun sequence 1,619
NZ_QKYU01000063.1 Humitalea rosea strain DSM 24525 Ga0183458_163, whole genome shotgun sequence 1,507
NZ_QKYU01000064.1 Humitalea rosea strain DSM 24525 Ga0183458_164, whole genome shotgun sequence 1,495
NZ_QKYU01000065.1 Humitalea rosea strain DSM 24525 Ga0183458_165, whole genome shotgun sequence 1,427
NZ_QKYU01000066.1 Humitalea rosea strain DSM 24525 Ga0183458_166, whole genome shotgun sequence 1,417
NZ_QKYU01000067.1 Humitalea rosea strain DSM 24525 Ga0183458_167, whole genome shotgun sequence 1,382
NZ_QKYU01000068.1 Humitalea rosea strain DSM 24525 Ga0183458_168, whole genome shotgun sequence 1,295
NZ_QKYU01000069.1 Humitalea rosea strain DSM 24525 Ga0183458_169, whole genome shotgun sequence 1,291
NZ_QKYU01000070.1 Humitalea rosea strain DSM 24525 Ga0183458_170, whole genome shotgun sequence 1,157
NZ_QKYU01000071.1 Humitalea rosea strain DSM 24525 Ga0183458_171, whole genome shotgun sequence 1,128
NZ_QKYU01000072.1 Humitalea rosea strain DSM 24525 Ga0183458_172, whole genome shotgun sequence 1,086
NZ_QKYU01000073.1 Humitalea rosea strain DSM 24525 Ga0183458_173, whole genome shotgun sequence 1,059

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory