fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhodobacter capsulatus DSM 1710

Genome identifier: GCF_003254295.1

NCBI assembly name: ASM325429v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Rhodobacter, Rhodobacter capsulatus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Rhodobacter, Rhodobacter capsulatus

Scaffolds: 24

Genes: 3,553 Protein-coding: 3,450 RNAs: 56 pseudogenes: 47

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QKZO01000001.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00001.1, whole genome shotgun sequence 499,662
NZ_QKZO01000002.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00002.2, whole genome shotgun sequence 481,730
NZ_QKZO01000003.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00003.3, whole genome shotgun sequence 411,314
NZ_QKZO01000004.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00004.4, whole genome shotgun sequence 351,759
NZ_QKZO01000005.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00005.5, whole genome shotgun sequence 314,919
NZ_QKZO01000006.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00006.6, whole genome shotgun sequence 263,245
NZ_QKZO01000007.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00007.7, whole genome shotgun sequence 237,578
NZ_QKZO01000008.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00008.8, whole genome shotgun sequence 199,757
NZ_QKZO01000009.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00009.9, whole genome shotgun sequence 165,217
NZ_QKZO01000010.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00010.10, whole genome shotgun sequence 142,700
NZ_QKZO01000011.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00011.11, whole genome shotgun sequence 135,679
NZ_QKZO01000012.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00012.12, whole genome shotgun sequence 105,157
NZ_QKZO01000013.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00013.13, whole genome shotgun sequence 93,944
NZ_QKZO01000014.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00014.14, whole genome shotgun sequence 78,531
NZ_QKZO01000015.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00015.15, whole genome shotgun sequence 69,334
NZ_QKZO01000016.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00016.16, whole genome shotgun sequence 33,000
NZ_QKZO01000017.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00017.17, whole genome shotgun sequence 31,803
NZ_QKZO01000018.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00018.18, whole genome shotgun sequence 25,209
NZ_QKZO01000019.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00019.19, whole genome shotgun sequence 13,382
NZ_QKZO01000020.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00020.20, whole genome shotgun sequence 5,391
NZ_QKZO01000021.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00021.21, whole genome shotgun sequence 4,950
NZ_QKZO01000022.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00022.22, whole genome shotgun sequence 2,011
NZ_QKZO01000023.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00023.23, whole genome shotgun sequence 1,342
NZ_QKZO01000024.1 Rhodobacter capsulatus strain DSM 1710 LY44DRAFT_scaffold00024.24, whole genome shotgun sequence 1,208

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory