fast.genomicscompare 6,575 genera of bacteria & archaea

 

Marinimicrobium_A alkaliphilum SW121

Genome identifier: GCF_003259155.1

NCBI assembly name: ASM325915v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Cellvibrionaceae, Marinimicrobium_A, Marinimicrobium_A alkaliphilum

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Cellvibrionaceae, Marinimicrobium, Marinimicrobium alkaliphilum

Scaffolds: 34

Genes: 3,240 Protein-coding: 3,183 RNAs: 48 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QGMQ01000001.1 Marinimicrobium alkaliphilum strain SW121 1, whole genome shotgun sequence 775,393
NZ_QGMQ01000002.1 Marinimicrobium alkaliphilum strain SW121 2, whole genome shotgun sequence 445,328
NZ_QGMQ01000003.1 Marinimicrobium alkaliphilum strain SW121 3, whole genome shotgun sequence 433,857
NZ_QGMQ01000004.1 Marinimicrobium alkaliphilum strain SW121 4, whole genome shotgun sequence 429,339
NZ_QGMQ01000005.1 Marinimicrobium alkaliphilum strain SW121 5, whole genome shotgun sequence 359,929
NZ_QGMQ01000006.1 Marinimicrobium alkaliphilum strain SW121 6, whole genome shotgun sequence 359,507
NZ_QGMQ01000007.1 Marinimicrobium alkaliphilum strain SW121 7, whole genome shotgun sequence 262,050
NZ_QGMQ01000008.1 Marinimicrobium alkaliphilum strain SW121 8, whole genome shotgun sequence 197,832
NZ_QGMQ01000009.1 Marinimicrobium alkaliphilum strain SW121 9, whole genome shotgun sequence 172,489
NZ_QGMQ01000010.1 Marinimicrobium alkaliphilum strain SW121 10, whole genome shotgun sequence 119,134
NZ_QGMQ01000011.1 Marinimicrobium alkaliphilum strain SW121 11, whole genome shotgun sequence 109,486
NZ_QGMQ01000012.1 Marinimicrobium alkaliphilum strain SW121 12, whole genome shotgun sequence 80,973
NZ_QGMQ01000013.1 Marinimicrobium alkaliphilum strain SW121 13, whole genome shotgun sequence 6,628
NZ_QGMQ01000014.1 Marinimicrobium alkaliphilum strain SW121 14, whole genome shotgun sequence 6,495
NZ_QGMQ01000015.1 Marinimicrobium alkaliphilum strain SW121 15, whole genome shotgun sequence 5,713
NZ_QGMQ01000016.1 Marinimicrobium alkaliphilum strain SW121 16, whole genome shotgun sequence 2,757
NZ_QGMQ01000017.1 Marinimicrobium alkaliphilum strain SW121 17, whole genome shotgun sequence 2,492
NZ_QGMQ01000018.1 Marinimicrobium alkaliphilum strain SW121 18, whole genome shotgun sequence 2,296
NZ_QGMQ01000019.1 Marinimicrobium alkaliphilum strain SW121 19, whole genome shotgun sequence 2,219
NZ_QGMQ01000020.1 Marinimicrobium alkaliphilum strain SW121 20, whole genome shotgun sequence 2,188
NZ_QGMQ01000021.1 Marinimicrobium alkaliphilum strain SW121 21, whole genome shotgun sequence 1,856
NZ_QGMQ01000022.1 Marinimicrobium alkaliphilum strain SW121 22, whole genome shotgun sequence 1,577
NZ_QGMQ01000023.1 Marinimicrobium alkaliphilum strain SW121 23, whole genome shotgun sequence 1,191
NZ_QGMQ01000024.1 Marinimicrobium alkaliphilum strain SW121 24, whole genome shotgun sequence 1,156
NZ_QGMQ01000025.1 Marinimicrobium alkaliphilum strain SW121 25, whole genome shotgun sequence 803
NZ_QGMQ01000026.1 Marinimicrobium alkaliphilum strain SW121 26, whole genome shotgun sequence 516
NZ_QGMQ01000027.1 Marinimicrobium alkaliphilum strain SW121 27, whole genome shotgun sequence 401
NZ_QGMQ01000028.1 Marinimicrobium alkaliphilum strain SW121 28, whole genome shotgun sequence 400
NZ_QGMQ01000029.1 Marinimicrobium alkaliphilum strain SW121 29, whole genome shotgun sequence 376
NZ_QGMQ01000030.1 Marinimicrobium alkaliphilum strain SW121 30, whole genome shotgun sequence 374
NZ_QGMQ01000031.1 Marinimicrobium alkaliphilum strain SW121 31, whole genome shotgun sequence 369
NZ_QGMQ01000032.1 Marinimicrobium alkaliphilum strain SW121 32, whole genome shotgun sequence 346
NZ_QGMQ01000033.1 Marinimicrobium alkaliphilum strain SW121 33, whole genome shotgun sequence 327
NZ_QGMQ01000034.1 Marinimicrobium alkaliphilum strain SW121 34, whole genome shotgun sequence 243

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory