fast.genomicscompare 6,575 genera of bacteria & archaea

 

NHYM01 sp003288815 16-1353

Genome identifier: GCF_003288815.1

NCBI assembly name: ASM328881v1

GTDB taxonomy: Bacteria, Campylobacterota, Campylobacteria, Campylobacterales, Helicobacteraceae, NHYM01, NHYM01 sp003288815

NCBI taxonomy: Bacteria, Campylobacterota, Epsilonproteobacteria, Campylobacterales, Helicobacteraceae, Helicobacter

Scaffolds: 32

Genes: 1,918 Protein-coding: 1,850 RNAs: 44 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_NHYM01000001.1 Helicobacter sp. 16-1353 NODE_1_length_285356_cov_24.1417, whole genome shotgun sequence 285,356
NZ_NHYM01000002.1 Helicobacter sp. 16-1353 NODE_2_length_194340_cov_21.8992, whole genome shotgun sequence 194,340
NZ_NHYM01000003.1 Helicobacter sp. 16-1353 NODE_3_length_184577_cov_22.6548, whole genome shotgun sequence 184,577
NZ_NHYM01000004.1 Helicobacter sp. 16-1353 NODE_4_length_183377_cov_27.717, whole genome shotgun sequence 183,377
NZ_NHYM01000005.1 Helicobacter sp. 16-1353 NODE_5_length_144100_cov_17.4816, whole genome shotgun sequence 144,100
NZ_NHYM01000006.1 Helicobacter sp. 16-1353 NODE_6_length_140213_cov_16.9971, whole genome shotgun sequence 140,213
NZ_NHYM01000007.1 Helicobacter sp. 16-1353 NODE_7_length_105107_cov_18.4453, whole genome shotgun sequence 105,107
NZ_NHYM01000008.1 Helicobacter sp. 16-1353 NODE_8_length_100967_cov_22.5011, whole genome shotgun sequence 100,967
NZ_NHYM01000009.1 Helicobacter sp. 16-1353 NODE_9_length_80817_cov_19.1585, whole genome shotgun sequence 80,817
NZ_NHYM01000010.1 Helicobacter sp. 16-1353 NODE_10_length_70599_cov_18.5813, whole genome shotgun sequence 70,599
NZ_NHYM01000011.1 Helicobacter sp. 16-1353 NODE_11_length_64276_cov_22.5432, whole genome shotgun sequence 64,276
NZ_NHYM01000012.1 Helicobacter sp. 16-1353 NODE_12_length_54501_cov_21.0726, whole genome shotgun sequence 54,501
NZ_NHYM01000013.1 Helicobacter sp. 16-1353 NODE_13_length_53547_cov_20.711, whole genome shotgun sequence 53,547
NZ_NHYM01000014.1 Helicobacter sp. 16-1353 NODE_14_length_46351_cov_16.733, whole genome shotgun sequence 46,351
NZ_NHYM01000015.1 Helicobacter sp. 16-1353 NODE_15_length_40291_cov_19.7875, whole genome shotgun sequence 40,291
NZ_NHYM01000016.1 Helicobacter sp. 16-1353 NODE_16_length_32525_cov_20.4554, whole genome shotgun sequence 32,525
NZ_NHYM01000017.1 Helicobacter sp. 16-1353 NODE_17_length_31940_cov_22.4483, whole genome shotgun sequence 31,940
NZ_NHYM01000018.1 Helicobacter sp. 16-1353 NODE_18_length_29825_cov_25.8362, whole genome shotgun sequence 29,825
NZ_NHYM01000019.1 Helicobacter sp. 16-1353 NODE_19_length_24361_cov_19.3632, whole genome shotgun sequence 24,361
NZ_NHYM01000020.1 Helicobacter sp. 16-1353 NODE_20_length_19502_cov_19.1287, whole genome shotgun sequence 19,502
NZ_NHYM01000021.1 Helicobacter sp. 16-1353 NODE_21_length_10902_cov_17.4456, whole genome shotgun sequence 10,902
NZ_NHYM01000022.1 Helicobacter sp. 16-1353 NODE_22_length_2714_cov_17.9277, whole genome shotgun sequence 2,714
NZ_NHYM01000023.1 Helicobacter sp. 16-1353 NODE_23_length_1838_cov_19.6185, whole genome shotgun sequence 1,838
NZ_NHYM01000024.1 Helicobacter sp. 16-1353 NODE_24_length_1213_cov_36.5943, whole genome shotgun sequence 1,213
NZ_NHYM01000025.1 Helicobacter sp. 16-1353 NODE_25_length_737_cov_154.056, whole genome shotgun sequence 737
NZ_NHYM01000026.1 Helicobacter sp. 16-1353 NODE_26_length_613_cov_121.068, whole genome shotgun sequence 613
NZ_NHYM01000027.1 Helicobacter sp. 16-1353 NODE_27_length_573_cov_31.2574, whole genome shotgun sequence 573
NZ_NHYM01000028.1 Helicobacter sp. 16-1353 NODE_28_length_536_cov_61.2128, whole genome shotgun sequence 536
NZ_NHYM01000029.1 Helicobacter sp. 16-1353 NODE_29_length_534_cov_27.8644, whole genome shotgun sequence 534
NZ_NHYM01000030.1 Helicobacter sp. 16-1353 NODE_30_length_427_cov_24.9238, whole genome shotgun sequence 427
NZ_NHYM01000031.1 Helicobacter sp. 16-1353 NODE_31_length_409_cov_26.6871, whole genome shotgun sequence 409
NZ_NHYM01000032.1 Helicobacter sp. 16-1353 NODE_33_length_365_cov_56.8571, whole genome shotgun sequence 365

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory