fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudogemmobacter bohemicus Cd-10

Genome identifier: GCF_003290025.1

NCBI assembly name: ASM329002v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudogemmobacter, Pseudogemmobacter bohemicus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudogemmobacter, Pseudogemmobacter bohemicus

Scaffolds: 16

Genes: 5,443 Protein-coding: 5,230 RNAs: 49 pseudogenes: 164

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QNHG01000001.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00001, whole genome shotgun sequence 1,661,786
NZ_QNHG01000002.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00002, whole genome shotgun sequence 1,442,964
NZ_QNHG01000003.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00003, whole genome shotgun sequence 864,840
NZ_QNHG01000004.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00004, whole genome shotgun sequence 670,900
NZ_QNHG01000005.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00005, whole genome shotgun sequence 320,875
NZ_QNHG01000006.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00006, whole genome shotgun sequence 218,700
NZ_QNHG01000007.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00007, whole genome shotgun sequence 212,506
NZ_QNHG01000008.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00008, whole genome shotgun sequence 169,624
NZ_QNHG01000009.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00009, whole genome shotgun sequence 13,643
NZ_QNHG01000010.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00010, whole genome shotgun sequence 7,407
NZ_QNHG01000011.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00011, whole genome shotgun sequence 6,627
NZ_QNHG01000012.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00012, whole genome shotgun sequence 6,218
NZ_QNHG01000013.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00013, whole genome shotgun sequence 3,419
NZ_QNHG01000014.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00014, whole genome shotgun sequence 3,232
NZ_QNHG01000015.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00015, whole genome shotgun sequence 2,575
NZ_QNHG01000016.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00016, whole genome shotgun sequence 2,426

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory