fast.genomicscompare 6,575 genera of bacteria & archaea

 

Helicobacter_D ganmani MIT 99-5101

Genome identifier: GCF_003364315.1

NCBI assembly name: ASM336431v1

GTDB taxonomy: Bacteria, Campylobacterota, Campylobacteria, Campylobacterales, Helicobacteraceae, Helicobacter_D, Helicobacter_D ganmani

NCBI taxonomy: Bacteria, Campylobacterota, Epsilonproteobacteria, Campylobacterales, Helicobacteraceae, Helicobacter, Helicobacter ganmani

Scaffolds: 30

Genes: 1,894 Protein-coding: 1,824 RNAs: 43 pseudogenes: 27

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_NXLS01000001.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_1_38819848.7325, whole genome shotgun sequence 388,198
NZ_NXLS01000002.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_2_29810454.9249, whole genome shotgun sequence 298,104
NZ_NXLS01000003.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_3_21992856.9149, whole genome shotgun sequence 219,928
NZ_NXLS01000004.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_4_17448950.3558, whole genome shotgun sequence 174,489
NZ_NXLS01000005.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_5_12031554.2629, whole genome shotgun sequence 120,315
NZ_NXLS01000006.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_6_11595759.5407, whole genome shotgun sequence 115,957
NZ_NXLS01000007.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_7_10262758.7355, whole genome shotgun sequence 102,627
NZ_NXLS01000008.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_8_8767260.3841, whole genome shotgun sequence 87,672
NZ_NXLS01000009.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_9_7927851.396, whole genome shotgun sequence 79,278
NZ_NXLS01000010.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_10_6485359.3957, whole genome shotgun sequence 64,853
NZ_NXLS01000011.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_11_6426147.9466, whole genome shotgun sequence 64,261
NZ_NXLS01000012.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_12_2971948.5101, whole genome shotgun sequence 29,719
NZ_NXLS01000013.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_13_1795752.2743, whole genome shotgun sequence 17,957
NZ_NXLS01000014.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_14_1491955.0395, whole genome shotgun sequence 14,919
NZ_NXLS01000015.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_15_1275542.5367, whole genome shotgun sequence 12,755
NZ_NXLS01000016.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_16_610158.0253, whole genome shotgun sequence 6,101
NZ_NXLS01000017.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_17_480663.2532, whole genome shotgun sequence 4,806
NZ_NXLS01000018.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_18_4596230.048, whole genome shotgun sequence 4,596
NZ_NXLS01000019.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_19_2343220.462, whole genome shotgun sequence 2,343
NZ_NXLS01000020.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_20_234165.9148, whole genome shotgun sequence 2,341
NZ_NXLS01000021.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_21_167860.6656, whole genome shotgun sequence 1,678
NZ_NXLS01000022.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_22_965100.268, whole genome shotgun sequence 965
NZ_NXLS01000023.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_23_784104.349, whole genome shotgun sequence 784
NZ_NXLS01000024.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_24_734147.302, whole genome shotgun sequence 734
NZ_NXLS01000025.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_25_707108.352, whole genome shotgun sequence 707
NZ_NXLS01000026.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_26_697103.1, whole genome shotgun sequence 697
NZ_NXLS01000027.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_27_68753.6786, whole genome shotgun sequence 687
NZ_NXLS01000028.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_28_656117.323, whole genome shotgun sequence 656
NZ_NXLS01000029.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_39_37393.9234, whole genome shotgun sequence 373
NZ_NXLS01000030.1 Helicobacter ganmani strain MIT 99-5101 H_ganmani_99-5101_46_31964.9, whole genome shotgun sequence 319

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory