fast.genomicscompare 6,575 genera of bacteria & archaea

 

HLUCCA09 sp003390865 IMCC34011

Genome identifier: GCF_003390865.1

NCBI assembly name: ASM339086v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, HLUCCA09, HLUCCA09 sp003390865

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Tropicimonas

Scaffolds: 12

Genes: 3,649 Protein-coding: 3,548 RNAs: 50 pseudogenes: 51

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QMEJ01000001.1 Tropicimonas sp. IMCC34011 NODE_1_length_1333423_cov_145.235822, whole genome shotgun sequence 1,333,423
NZ_QMEJ01000002.1 Tropicimonas sp. IMCC34011 NODE_2_length_641963_cov_142.519036, whole genome shotgun sequence 641,963
NZ_QMEJ01000003.1 Tropicimonas sp. IMCC34011 NODE_3_length_536159_cov_149.498467, whole genome shotgun sequence 536,159
NZ_QMEJ01000004.1 Tropicimonas sp. IMCC34011 NODE_4_length_524131_cov_149.594213, whole genome shotgun sequence 524,131
NZ_QMEJ01000005.1 Tropicimonas sp. IMCC34011 NODE_5_length_484839_cov_148.631495, whole genome shotgun sequence 484,839
NZ_QMEJ01000006.1 Tropicimonas sp. IMCC34011 NODE_6_length_251138_cov_147.876408, whole genome shotgun sequence 251,138
NZ_QMEJ01000007.1 Tropicimonas sp. IMCC34011 NODE_7_length_15434_cov_447.251127, whole genome shotgun sequence 15,434
NZ_QMEJ01000008.1 Tropicimonas sp. IMCC34011 NODE_8_length_8110_cov_161.822872, whole genome shotgun sequence 8,110
NZ_QMEJ01000009.1 Tropicimonas sp. IMCC34011 NODE_9_length_5909_cov_340.130405, whole genome shotgun sequence 5,909
NZ_QMEJ01000010.1 Tropicimonas sp. IMCC34011 NODE_11_length_734_cov_302.054366, whole genome shotgun sequence 734
NZ_QMEJ01000011.1 Tropicimonas sp. IMCC34011 NODE_12_length_700_cov_300.432810, whole genome shotgun sequence 700
NZ_QMEJ01000012.1 Tropicimonas sp. IMCC34011 NODE_169_length_255_cov_171.664062, whole genome shotgun sequence 255

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory