fast.genomicscompare 6,575 genera of bacteria & archaea

 

4M-Z18 sp003400305 4M-Z18

Genome identifier: GCF_003400305.1

NCBI assembly name: ASM340030v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Beijerinckiaceae, 4M-Z18, 4M-Z18 sp003400305

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Beijerinckiaceae, Methylovirgula

Scaffolds: 23

Genes: 4,649 Protein-coding: 4,515 RNAs: 55 pseudogenes: 79

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QUOY01000001.1 Methylovirgula sp. 4M-Z18 scaffold1, whole genome shotgun sequence 1,784,396
NZ_QUOY01000002.1 Methylovirgula sp. 4M-Z18 scaffold2, whole genome shotgun sequence 527,340
NZ_QUOY01000003.1 Methylovirgula sp. 4M-Z18 scaffold3, whole genome shotgun sequence 485,551
NZ_QUOY01000004.1 Methylovirgula sp. 4M-Z18 scaffold4, whole genome shotgun sequence 355,730
NZ_QUOY01000005.1 Methylovirgula sp. 4M-Z18 scaffold5, whole genome shotgun sequence 313,542
NZ_QUOY01000006.1 Methylovirgula sp. 4M-Z18 scaffold6, whole genome shotgun sequence 216,709
NZ_QUOY01000007.1 Methylovirgula sp. 4M-Z18 scaffold7, whole genome shotgun sequence 184,868
NZ_QUOY01000008.1 Methylovirgula sp. 4M-Z18 scaffold8, whole genome shotgun sequence 185,015
NZ_QUOY01000009.1 Methylovirgula sp. 4M-Z18 scaffold9, whole genome shotgun sequence 180,748
NZ_QUOY01000010.1 Methylovirgula sp. 4M-Z18 scaffold10, whole genome shotgun sequence 169,783
NZ_QUOY01000011.1 Methylovirgula sp. 4M-Z18 scaffold11, whole genome shotgun sequence 160,401
NZ_QUOY01000012.1 Methylovirgula sp. 4M-Z18 scaffold12, whole genome shotgun sequence 112,287
NZ_QUOY01000013.1 Methylovirgula sp. 4M-Z18 scaffold13, whole genome shotgun sequence 94,538
NZ_QUOY01000014.1 Methylovirgula sp. 4M-Z18 scaffold14, whole genome shotgun sequence 65,241
NZ_QUOY01000015.1 Methylovirgula sp. 4M-Z18 scaffold15, whole genome shotgun sequence 52,249
NZ_QUOY01000016.1 Methylovirgula sp. 4M-Z18 scaffold16, whole genome shotgun sequence 41,460
NZ_QUOY01000017.1 Methylovirgula sp. 4M-Z18 scaffold17, whole genome shotgun sequence 37,642
NZ_QUOY01000018.1 Methylovirgula sp. 4M-Z18 scaffold18, whole genome shotgun sequence 16,600
NZ_QUOY01000019.1 Methylovirgula sp. 4M-Z18 scaffold19, whole genome shotgun sequence 5,692
NZ_QUOY01000020.1 Methylovirgula sp. 4M-Z18 scaffold20, whole genome shotgun sequence 4,976
NZ_QUOY01000021.1 Methylovirgula sp. 4M-Z18 scaffold21, whole genome shotgun sequence 3,941
NZ_QUOY01000022.1 Methylovirgula sp. 4M-Z18 scaffold22, whole genome shotgun sequence 2,563
NZ_QUOY01000023.1 Methylovirgula sp. 4M-Z18 scaffold23, whole genome shotgun sequence 1,850

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory