fast.genomicscompare 6,575 genera of bacteria & archaea

 

Parahaliea mediterranea DSM 21924

Genome identifier: GCF_003402235.1

NCBI assembly name: ASM340223v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Halieaceae, Parahaliea, Parahaliea mediterranea

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Halieaceae, Parahaliea, Parahaliea mediterranea

Scaffolds: 29

Genes: 4,467 Protein-coding: 4,396 RNAs: 49 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QEWO01000001.1 Parahaliea mediterranea strain DSM 21924 Scaffold1_1, whole genome shotgun sequence 1,309,432
NZ_QEWO01000002.1 Parahaliea mediterranea strain DSM 21924 Scaffold2_1, whole genome shotgun sequence 884,486
NZ_QEWO01000003.1 Parahaliea mediterranea strain DSM 21924 Scaffold3_1, whole genome shotgun sequence 667,402
NZ_QEWO01000004.1 Parahaliea mediterranea strain DSM 21924 Scaffold4_1, whole genome shotgun sequence 584,910
NZ_QEWO01000005.1 Parahaliea mediterranea strain DSM 21924 Scaffold5_1, whole genome shotgun sequence 577,668
NZ_QEWO01000006.1 Parahaliea mediterranea strain DSM 21924 Scaffold6_1, whole genome shotgun sequence 283,495
NZ_QEWO01000007.1 Parahaliea mediterranea strain DSM 21924 Scaffold7_1, whole genome shotgun sequence 260,030
NZ_QEWO01000008.1 Parahaliea mediterranea strain DSM 21924 Scaffold8_1, whole genome shotgun sequence 129,358
NZ_QEWO01000009.1 Parahaliea mediterranea strain DSM 21924 Scaffold9_1, whole genome shotgun sequence 105,370
NZ_QEWO01000010.1 Parahaliea mediterranea strain DSM 21924 Scaffold10_1, whole genome shotgun sequence 86,931
NZ_QEWO01000011.1 Parahaliea mediterranea strain DSM 21924 Scaffold11_1, whole genome shotgun sequence 79,799
NZ_QEWO01000012.1 Parahaliea mediterranea strain DSM 21924 Scaffold12_1, whole genome shotgun sequence 32,829
NZ_QEWO01000013.1 Parahaliea mediterranea strain DSM 21924 Scaffold13_1, whole genome shotgun sequence 24,155
NZ_QEWO01000014.1 Parahaliea mediterranea strain DSM 21924 Scaffold14_1, whole genome shotgun sequence 15,001
NZ_QEWO01000015.1 Parahaliea mediterranea strain DSM 21924 Scaffold15_1, whole genome shotgun sequence 14,071
NZ_QEWO01000016.1 Parahaliea mediterranea strain DSM 21924 Scaffold16_1, whole genome shotgun sequence 4,750
NZ_QEWO01000017.1 Parahaliea mediterranea strain DSM 21924 Scaffold17_1, whole genome shotgun sequence 4,673
NZ_QEWO01000018.1 Parahaliea mediterranea strain DSM 21924 Scaffold18_1, whole genome shotgun sequence 4,405
NZ_QEWO01000019.1 Parahaliea mediterranea strain DSM 21924 Scaffold19_1, whole genome shotgun sequence 3,514
NZ_QEWO01000020.1 Parahaliea mediterranea strain DSM 21924 Scaffold20_1, whole genome shotgun sequence 3,116
NZ_QEWO01000021.1 Parahaliea mediterranea strain DSM 21924 Scaffold21_1, whole genome shotgun sequence 2,713
NZ_QEWO01000022.1 Parahaliea mediterranea strain DSM 21924 Scaffold22_1, whole genome shotgun sequence 2,472
NZ_QEWO01000023.1 Parahaliea mediterranea strain DSM 21924 Scaffold23_1, whole genome shotgun sequence 1,679
NZ_QEWO01000024.1 Parahaliea mediterranea strain DSM 21924 Scaffold24_1, whole genome shotgun sequence 1,416
NZ_QEWO01000025.1 Parahaliea mediterranea strain DSM 21924 Scaffold25_1, whole genome shotgun sequence 1,340
NZ_QEWO01000026.1 Parahaliea mediterranea strain DSM 21924 Scaffold26_1, whole genome shotgun sequence 1,258
NZ_QEWO01000027.1 Parahaliea mediterranea strain DSM 21924 Scaffold27_1, whole genome shotgun sequence 1,121
NZ_QEWO01000028.1 Parahaliea mediterranea strain DSM 21924 Scaffold28_1, whole genome shotgun sequence 1,073
NZ_QEWO01000029.1 Parahaliea mediterranea strain DSM 21924 Scaffold29_1, whole genome shotgun sequence 598

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory