fast.genomicscompare 6,575 genera of bacteria & archaea

 

Mesorhizobium_G denitrificans LA-28

Genome identifier: GCF_003403035.1

NCBI assembly name: ASM340303v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Mesorhizobium_G, Mesorhizobium_G denitrificans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Mesorhizobium, Mesorhizobium denitrificans

Scaffolds: 45

Genes: 4,233 Protein-coding: 4,130 RNAs: 54 pseudogenes: 49

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QURN01000001.1 Mesorhizobium denitrificans strain LA-28 contig_1, whole genome shotgun sequence 534,275
NZ_QURN01000002.1 Mesorhizobium denitrificans strain LA-28 contig_2, whole genome shotgun sequence 196,412
NZ_QURN01000003.1 Mesorhizobium denitrificans strain LA-28 contig_3, whole genome shotgun sequence 330,736
NZ_QURN01000004.1 Mesorhizobium denitrificans strain LA-28 contig_4, whole genome shotgun sequence 383,232
NZ_QURN01000005.1 Mesorhizobium denitrificans strain LA-28 contig_5, whole genome shotgun sequence 357,752
NZ_QURN01000006.1 Mesorhizobium denitrificans strain LA-28 contig_6, whole genome shotgun sequence 353,056
NZ_QURN01000007.1 Mesorhizobium denitrificans strain LA-28 contig_7, whole genome shotgun sequence 248,341
NZ_QURN01000008.1 Mesorhizobium denitrificans strain LA-28 contig_8, whole genome shotgun sequence 220,697
NZ_QURN01000009.1 Mesorhizobium denitrificans strain LA-28 contig_9, whole genome shotgun sequence 187,917
NZ_QURN01000010.1 Mesorhizobium denitrificans strain LA-28 contig_10, whole genome shotgun sequence 183,170
NZ_QURN01000011.1 Mesorhizobium denitrificans strain LA-28 contig_11, whole genome shotgun sequence 169,479
NZ_QURN01000012.1 Mesorhizobium denitrificans strain LA-28 contig_12, whole genome shotgun sequence 152,300
NZ_QURN01000013.1 Mesorhizobium denitrificans strain LA-28 contig_13, whole genome shotgun sequence 144,394
NZ_QURN01000014.1 Mesorhizobium denitrificans strain LA-28 contig_14, whole genome shotgun sequence 143,290
NZ_QURN01000015.1 Mesorhizobium denitrificans strain LA-28 contig_15, whole genome shotgun sequence 116,192
NZ_QURN01000016.1 Mesorhizobium denitrificans strain LA-28 contig_16, whole genome shotgun sequence 102,945
NZ_QURN01000017.1 Mesorhizobium denitrificans strain LA-28 contig_17, whole genome shotgun sequence 86,039
NZ_QURN01000018.1 Mesorhizobium denitrificans strain LA-28 contig_18, whole genome shotgun sequence 60,200
NZ_QURN01000019.1 Mesorhizobium denitrificans strain LA-28 contig_19, whole genome shotgun sequence 57,575
NZ_QURN01000020.1 Mesorhizobium denitrificans strain LA-28 contig_20, whole genome shotgun sequence 50,469
NZ_QURN01000021.1 Mesorhizobium denitrificans strain LA-28 contig_21, whole genome shotgun sequence 49,280
NZ_QURN01000022.1 Mesorhizobium denitrificans strain LA-28 contig_22, whole genome shotgun sequence 7,520
NZ_QURN01000023.1 Mesorhizobium denitrificans strain LA-28 contig_23, whole genome shotgun sequence 35,096
NZ_QURN01000024.1 Mesorhizobium denitrificans strain LA-28 contig_24, whole genome shotgun sequence 35,750
NZ_QURN01000025.1 Mesorhizobium denitrificans strain LA-28 contig_25, whole genome shotgun sequence 35,599
NZ_QURN01000026.1 Mesorhizobium denitrificans strain LA-28 contig_26, whole genome shotgun sequence 30,865
NZ_QURN01000027.1 Mesorhizobium denitrificans strain LA-28 contig_27, whole genome shotgun sequence 18,527
NZ_QURN01000028.1 Mesorhizobium denitrificans strain LA-28 contig_28, whole genome shotgun sequence 15,632
NZ_QURN01000029.1 Mesorhizobium denitrificans strain LA-28 contig_29, whole genome shotgun sequence 14,157
NZ_QURN01000030.1 Mesorhizobium denitrificans strain LA-28 contig_30, whole genome shotgun sequence 12,145
NZ_QURN01000031.1 Mesorhizobium denitrificans strain LA-28 contig_31, whole genome shotgun sequence 6,032
NZ_QURN01000032.1 Mesorhizobium denitrificans strain LA-28 contig_32, whole genome shotgun sequence 5,449
NZ_QURN01000033.1 Mesorhizobium denitrificans strain LA-28 contig_33, whole genome shotgun sequence 5,108
NZ_QURN01000034.1 Mesorhizobium denitrificans strain LA-28 contig_34, whole genome shotgun sequence 4,415
NZ_QURN01000035.1 Mesorhizobium denitrificans strain LA-28 contig_35, whole genome shotgun sequence 3,614
NZ_QURN01000036.1 Mesorhizobium denitrificans strain LA-28 contig_36, whole genome shotgun sequence 3,138
NZ_QURN01000037.1 Mesorhizobium denitrificans strain LA-28 contig_37, whole genome shotgun sequence 2,239
NZ_QURN01000038.1 Mesorhizobium denitrificans strain LA-28 contig_38, whole genome shotgun sequence 2,132
NZ_QURN01000039.1 Mesorhizobium denitrificans strain LA-28 contig_39, whole genome shotgun sequence 2,015
NZ_QURN01000040.1 Mesorhizobium denitrificans strain LA-28 contig_40, whole genome shotgun sequence 1,635
NZ_QURN01000041.1 Mesorhizobium denitrificans strain LA-28 contig_41, whole genome shotgun sequence 1,526
NZ_QURN01000042.1 Mesorhizobium denitrificans strain LA-28 contig_42, whole genome shotgun sequence 1,462
NZ_QURN01000043.1 Mesorhizobium denitrificans strain LA-28 contig_43, whole genome shotgun sequence 1,409
NZ_QURN01000044.1 Mesorhizobium denitrificans strain LA-28 contig_44, whole genome shotgun sequence 1,409
NZ_QURN01000045.1 Mesorhizobium denitrificans strain LA-28 contig_45, whole genome shotgun sequence 1,176

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory