fast.genomicscompare 6,575 genera of bacteria & archaea

 

Dorea_D hominis AM10-31

Genome identifier: GCF_003435815.1

NCBI assembly name: ASM343581v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Dorea_D, Dorea_D hominis

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Dorea

Scaffolds: 18

Genes: 2,765 Protein-coding: 2,664 RNAs: 54 pseudogenes: 47

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QTUV01000001.1 Dorea sp. AM10-31 AM10-31.Scaf1, whole genome shotgun sequence 639,005
NZ_QTUV01000002.1 Dorea sp. AM10-31 AM10-31.Scaf2, whole genome shotgun sequence 631,567
NZ_QTUV01000003.1 Dorea sp. AM10-31 AM10-31.Scaf3, whole genome shotgun sequence 313,671
NZ_QTUV01000004.1 Dorea sp. AM10-31 AM10-31.Scaf4, whole genome shotgun sequence 205,672
NZ_QTUV01000005.1 Dorea sp. AM10-31 AM10-31.Scaf5, whole genome shotgun sequence 203,807
NZ_QTUV01000006.1 Dorea sp. AM10-31 AM10-31.Scaf6, whole genome shotgun sequence 177,933
NZ_QTUV01000007.1 Dorea sp. AM10-31 AM10-31.Scaf7, whole genome shotgun sequence 172,488
NZ_QTUV01000008.1 Dorea sp. AM10-31 AM10-31.Scaf8, whole genome shotgun sequence 151,348
NZ_QTUV01000009.1 Dorea sp. AM10-31 AM10-31.Scaf9, whole genome shotgun sequence 104,447
NZ_QTUV01000010.1 Dorea sp. AM10-31 AM10-31.Scaf10, whole genome shotgun sequence 84,711
NZ_QTUV01000011.1 Dorea sp. AM10-31 AM10-31.Scaf11, whole genome shotgun sequence 67,768
NZ_QTUV01000012.1 Dorea sp. AM10-31 AM10-31.Scaf12, whole genome shotgun sequence 62,629
NZ_QTUV01000013.1 Dorea sp. AM10-31 AM10-31.Scaf13, whole genome shotgun sequence 49,973
NZ_QTUV01000014.1 Dorea sp. AM10-31 AM10-31.Scaf14, whole genome shotgun sequence 35,521
NZ_QTUV01000015.1 Dorea sp. AM10-31 AM10-31.Scaf15, whole genome shotgun sequence 16,858
NZ_QTUV01000016.1 Dorea sp. AM10-31 AM10-31.Scaf16, whole genome shotgun sequence 1,557
NZ_QTUV01000017.1 Dorea sp. AM10-31 AM10-31.Scaf17, whole genome shotgun sequence 1,318
NZ_QTUV01000018.1 Dorea sp. AM10-31 AM10-31.Scaf18, whole genome shotgun sequence 529

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory