fast.genomicscompare 6,575 genera of bacteria & archaea

 

Ruminococcus_E sp003438075 OM08-24

Genome identifier: GCF_003438075.1

NCBI assembly name: ASM343807v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Acutalibacteraceae, Ruminococcus_E, Ruminococcus_E sp003438075

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Eubacteriaceae, Eubacterium

Scaffolds: 21

Genes: 2,471 Protein-coding: 2,374 RNAs: 58 pseudogenes: 39

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QSTA01000001.1 Eubacterium sp. OM08-24 OM08-24.Scaf1, whole genome shotgun sequence 998,390
NZ_QSTA01000002.1 Eubacterium sp. OM08-24 OM08-24.Scaf2, whole genome shotgun sequence 377,249
NZ_QSTA01000003.1 Eubacterium sp. OM08-24 OM08-24.Scaf3, whole genome shotgun sequence 249,165
NZ_QSTA01000004.1 Eubacterium sp. OM08-24 OM08-24.Scaf4, whole genome shotgun sequence 145,536
NZ_QSTA01000005.1 Eubacterium sp. OM08-24 OM08-24.Scaf5, whole genome shotgun sequence 106,484
NZ_QSTA01000006.1 Eubacterium sp. OM08-24 OM08-24.Scaf6, whole genome shotgun sequence 97,056
NZ_QSTA01000007.1 Eubacterium sp. OM08-24 OM08-24.Scaf7, whole genome shotgun sequence 89,975
NZ_QSTA01000008.1 Eubacterium sp. OM08-24 OM08-24.Scaf8, whole genome shotgun sequence 86,690
NZ_QSTA01000009.1 Eubacterium sp. OM08-24 OM08-24.Scaf9, whole genome shotgun sequence 76,671
NZ_QSTA01000010.1 Eubacterium sp. OM08-24 OM08-24.Scaf10, whole genome shotgun sequence 67,166
NZ_QSTA01000011.1 Eubacterium sp. OM08-24 OM08-24.Scaf11, whole genome shotgun sequence 66,344
NZ_QSTA01000012.1 Eubacterium sp. OM08-24 OM08-24.Scaf12, whole genome shotgun sequence 59,044
NZ_QSTA01000013.1 Eubacterium sp. OM08-24 OM08-24.Scaf13, whole genome shotgun sequence 56,227
NZ_QSTA01000014.1 Eubacterium sp. OM08-24 OM08-24.Scaf14, whole genome shotgun sequence 43,465
NZ_QSTA01000015.1 Eubacterium sp. OM08-24 OM08-24.Scaf15, whole genome shotgun sequence 26,443
NZ_QSTA01000016.1 Eubacterium sp. OM08-24 OM08-24.Scaf16, whole genome shotgun sequence 9,653
NZ_QSTA01000017.1 Eubacterium sp. OM08-24 OM08-24.Scaf17, whole genome shotgun sequence 3,909
NZ_QSTA01000018.1 Eubacterium sp. OM08-24 OM08-24.Scaf18, whole genome shotgun sequence 3,319
NZ_QSTA01000019.1 Eubacterium sp. OM08-24 OM08-24.Scaf19, whole genome shotgun sequence 1,668
NZ_QSTA01000020.1 Eubacterium sp. OM08-24 OM08-24.Scaf20, whole genome shotgun sequence 698
NZ_QSTA01000021.1 Eubacterium sp. OM08-24 OM08-24.Scaf21, whole genome shotgun sequence 659

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory