fast.genomicscompare 6,575 genera of bacteria & archaea

 

Eubacterium_F sp003491505 AF37-5

Genome identifier: GCF_003477605.1

NCBI assembly name: ASM347760v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Eubacterium_F, Eubacterium_F sp003491505

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium

Scaffolds: 64

Genes: 3,011 Protein-coding: 2,901 RNAs: 60 pseudogenes: 50

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QUDR01000001.1 Clostridium sp. AF37-5 AF37-5.Scaf1, whole genome shotgun sequence 287,736
NZ_QUDR01000002.1 Clostridium sp. AF37-5 AF37-5.Scaf2, whole genome shotgun sequence 226,558
NZ_QUDR01000003.1 Clostridium sp. AF37-5 AF37-5.Scaf3, whole genome shotgun sequence 225,764
NZ_QUDR01000004.1 Clostridium sp. AF37-5 AF37-5.Scaf4, whole genome shotgun sequence 195,851
NZ_QUDR01000005.1 Clostridium sp. AF37-5 AF37-5.Scaf5, whole genome shotgun sequence 174,025
NZ_QUDR01000006.1 Clostridium sp. AF37-5 AF37-5.Scaf6, whole genome shotgun sequence 173,728
NZ_QUDR01000007.1 Clostridium sp. AF37-5 AF37-5.Scaf7, whole genome shotgun sequence 116,333
NZ_QUDR01000008.1 Clostridium sp. AF37-5 AF37-5.Scaf8, whole genome shotgun sequence 115,936
NZ_QUDR01000009.1 Clostridium sp. AF37-5 AF37-5.Scaf9, whole genome shotgun sequence 110,730
NZ_QUDR01000010.1 Clostridium sp. AF37-5 AF37-5.Scaf10, whole genome shotgun sequence 107,101
NZ_QUDR01000011.1 Clostridium sp. AF37-5 AF37-5.Scaf11, whole genome shotgun sequence 103,082
NZ_QUDR01000012.1 Clostridium sp. AF37-5 AF37-5.Scaf12, whole genome shotgun sequence 91,910
NZ_QUDR01000013.1 Clostridium sp. AF37-5 AF37-5.Scaf13, whole genome shotgun sequence 88,842
NZ_QUDR01000014.1 Clostridium sp. AF37-5 AF37-5.Scaf14, whole genome shotgun sequence 87,774
NZ_QUDR01000015.1 Clostridium sp. AF37-5 AF37-5.Scaf15, whole genome shotgun sequence 84,415
NZ_QUDR01000016.1 Clostridium sp. AF37-5 AF37-5.Scaf16, whole genome shotgun sequence 70,310
NZ_QUDR01000017.1 Clostridium sp. AF37-5 AF37-5.Scaf17, whole genome shotgun sequence 64,687
NZ_QUDR01000018.1 Clostridium sp. AF37-5 AF37-5.Scaf18, whole genome shotgun sequence 58,861
NZ_QUDR01000019.1 Clostridium sp. AF37-5 AF37-5.Scaf19, whole genome shotgun sequence 57,850
NZ_QUDR01000020.1 Clostridium sp. AF37-5 AF37-5.Scaf20, whole genome shotgun sequence 56,489
NZ_QUDR01000021.1 Clostridium sp. AF37-5 AF37-5.Scaf21, whole genome shotgun sequence 53,670
NZ_QUDR01000022.1 Clostridium sp. AF37-5 AF37-5.Scaf22, whole genome shotgun sequence 52,220
NZ_QUDR01000023.1 Clostridium sp. AF37-5 AF37-5.Scaf23, whole genome shotgun sequence 48,923
NZ_QUDR01000024.1 Clostridium sp. AF37-5 AF37-5.Scaf24, whole genome shotgun sequence 48,745
NZ_QUDR01000025.1 Clostridium sp. AF37-5 AF37-5.Scaf25, whole genome shotgun sequence 45,240
NZ_QUDR01000026.1 Clostridium sp. AF37-5 AF37-5.Scaf26, whole genome shotgun sequence 43,685
NZ_QUDR01000027.1 Clostridium sp. AF37-5 AF37-5.Scaf27, whole genome shotgun sequence 34,440
NZ_QUDR01000028.1 Clostridium sp. AF37-5 AF37-5.Scaf28, whole genome shotgun sequence 30,015
NZ_QUDR01000029.1 Clostridium sp. AF37-5 AF37-5.Scaf29, whole genome shotgun sequence 27,977
NZ_QUDR01000030.1 Clostridium sp. AF37-5 AF37-5.Scaf30, whole genome shotgun sequence 27,389
NZ_QUDR01000031.1 Clostridium sp. AF37-5 AF37-5.Scaf31, whole genome shotgun sequence 24,678
NZ_QUDR01000032.1 Clostridium sp. AF37-5 AF37-5.Scaf32, whole genome shotgun sequence 23,865
NZ_QUDR01000033.1 Clostridium sp. AF37-5 AF37-5.Scaf33, whole genome shotgun sequence 18,328
NZ_QUDR01000034.1 Clostridium sp. AF37-5 AF37-5.Scaf34, whole genome shotgun sequence 14,775
NZ_QUDR01000035.1 Clostridium sp. AF37-5 AF37-5.Scaf35, whole genome shotgun sequence 12,338
NZ_QUDR01000036.1 Clostridium sp. AF37-5 AF37-5.Scaf36, whole genome shotgun sequence 11,047
NZ_QUDR01000037.1 Clostridium sp. AF37-5 AF37-5.Scaf37, whole genome shotgun sequence 10,298
NZ_QUDR01000038.1 Clostridium sp. AF37-5 AF37-5.Scaf38, whole genome shotgun sequence 10,230
NZ_QUDR01000039.1 Clostridium sp. AF37-5 AF37-5.Scaf39, whole genome shotgun sequence 8,023
NZ_QUDR01000040.1 Clostridium sp. AF37-5 AF37-5.Scaf40, whole genome shotgun sequence 7,979
NZ_QUDR01000041.1 Clostridium sp. AF37-5 AF37-5.Scaf41, whole genome shotgun sequence 6,663
NZ_QUDR01000042.1 Clostridium sp. AF37-5 AF37-5.Scaf42, whole genome shotgun sequence 6,159
NZ_QUDR01000043.1 Clostridium sp. AF37-5 AF37-5.Scaf43, whole genome shotgun sequence 5,500
NZ_QUDR01000044.1 Clostridium sp. AF37-5 AF37-5.Scaf44, whole genome shotgun sequence 4,649
NZ_QUDR01000045.1 Clostridium sp. AF37-5 AF37-5.Scaf45, whole genome shotgun sequence 3,707
NZ_QUDR01000046.1 Clostridium sp. AF37-5 AF37-5.Scaf46, whole genome shotgun sequence 3,386
NZ_QUDR01000047.1 Clostridium sp. AF37-5 AF37-5.Scaf47, whole genome shotgun sequence 3,164
NZ_QUDR01000048.1 Clostridium sp. AF37-5 AF37-5.Scaf48, whole genome shotgun sequence 2,968
NZ_QUDR01000049.1 Clostridium sp. AF37-5 AF37-5.Scaf49, whole genome shotgun sequence 1,728
NZ_QUDR01000050.1 Clostridium sp. AF37-5 AF37-5.Scaf50, whole genome shotgun sequence 1,720
NZ_QUDR01000051.1 Clostridium sp. AF37-5 AF37-5.Scaf51, whole genome shotgun sequence 1,699
NZ_QUDR01000052.1 Clostridium sp. AF37-5 AF37-5.Scaf52, whole genome shotgun sequence 1,655
NZ_QUDR01000053.1 Clostridium sp. AF37-5 AF37-5.Scaf53, whole genome shotgun sequence 1,583
NZ_QUDR01000054.1 Clostridium sp. AF37-5 AF37-5.Scaf54, whole genome shotgun sequence 1,542
NZ_QUDR01000055.1 Clostridium sp. AF37-5 AF37-5.Scaf55, whole genome shotgun sequence 1,465
NZ_QUDR01000056.1 Clostridium sp. AF37-5 AF37-5.Scaf56, whole genome shotgun sequence 1,460
NZ_QUDR01000057.1 Clostridium sp. AF37-5 AF37-5.Scaf57, whole genome shotgun sequence 1,238
NZ_QUDR01000058.1 Clostridium sp. AF37-5 AF37-5.Scaf58, whole genome shotgun sequence 1,166
NZ_QUDR01000059.1 Clostridium sp. AF37-5 AF37-5.Scaf59, whole genome shotgun sequence 1,116
NZ_QUDR01000060.1 Clostridium sp. AF37-5 AF37-5.Scaf60, whole genome shotgun sequence 999
NZ_QUDR01000061.1 Clostridium sp. AF37-5 AF37-5.Scaf61, whole genome shotgun sequence 733
NZ_QUDR01000062.1 Clostridium sp. AF37-5 AF37-5.Scaf62, whole genome shotgun sequence 589
NZ_QUDR01000063.1 Clostridium sp. AF37-5 AF37-5.Scaf63, whole genome shotgun sequence 540
NZ_QUDR01000064.1 Clostridium sp. AF37-5 AF37-5.Scaf64, whole genome shotgun sequence 525

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory