fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pararoseburia lenta AM51-8

Genome identifier: GCF_003478275.1

NCBI assembly name: ASM347827v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Pararoseburia, Pararoseburia lenta

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Roseburia

Scaffolds: 15

Genes: 2,625 Protein-coding: 2,350 RNAs: 58 pseudogenes: 217

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QUEY01000001.1 Roseburia sp. AM51-8 AM51-8.Scaf1, whole genome shotgun sequence 700,426
NZ_QUEY01000002.1 Roseburia sp. AM51-8 AM51-8.Scaf2, whole genome shotgun sequence 647,524
NZ_QUEY01000003.1 Roseburia sp. AM51-8 AM51-8.Scaf3, whole genome shotgun sequence 529,838
NZ_QUEY01000004.1 Roseburia sp. AM51-8 AM51-8.Scaf4, whole genome shotgun sequence 282,114
NZ_QUEY01000005.1 Roseburia sp. AM51-8 AM51-8.Scaf5, whole genome shotgun sequence 168,194
NZ_QUEY01000006.1 Roseburia sp. AM51-8 AM51-8.Scaf6, whole genome shotgun sequence 81,465
NZ_QUEY01000007.1 Roseburia sp. AM51-8 AM51-8.Scaf7, whole genome shotgun sequence 77,807
NZ_QUEY01000008.1 Roseburia sp. AM51-8 AM51-8.Scaf8, whole genome shotgun sequence 77,530
NZ_QUEY01000009.1 Roseburia sp. AM51-8 AM51-8.Scaf9, whole genome shotgun sequence 12,915
NZ_QUEY01000010.1 Roseburia sp. AM51-8 AM51-8.Scaf10, whole genome shotgun sequence 11,284
NZ_QUEY01000011.1 Roseburia sp. AM51-8 AM51-8.Scaf11, whole genome shotgun sequence 5,188
NZ_QUEY01000012.1 Roseburia sp. AM51-8 AM51-8.Scaf12, whole genome shotgun sequence 3,203
NZ_QUEY01000013.1 Roseburia sp. AM51-8 AM51-8.Scaf13, whole genome shotgun sequence 1,053
NZ_QUEY01000014.1 Roseburia sp. AM51-8 AM51-8.Scaf14, whole genome shotgun sequence 762
NZ_QUEY01000015.1 Roseburia sp. AM51-8 AM51-8.Scaf15, whole genome shotgun sequence 607

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory