fast.genomicscompare 6,575 genera of bacteria & archaea

 

Roseburia_C amylophila AF12-17LB

Genome identifier: GCF_003479605.1

NCBI assembly name: ASM347960v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Roseburia_C, Roseburia_C amylophila

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Roseburia

Scaffolds: 35

Genes: 2,885 Protein-coding: 2,786 RNAs: 57 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QUHR01000001.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf1, whole genome shotgun sequence 589,952
NZ_QUHR01000002.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf2, whole genome shotgun sequence 395,586
NZ_QUHR01000003.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf3, whole genome shotgun sequence 347,454
NZ_QUHR01000004.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf4, whole genome shotgun sequence 254,992
NZ_QUHR01000005.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf5, whole genome shotgun sequence 222,517
NZ_QUHR01000006.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf6, whole genome shotgun sequence 195,375
NZ_QUHR01000007.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf7, whole genome shotgun sequence 159,775
NZ_QUHR01000008.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf8, whole genome shotgun sequence 137,034
NZ_QUHR01000009.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf9, whole genome shotgun sequence 116,163
NZ_QUHR01000010.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf10, whole genome shotgun sequence 110,097
NZ_QUHR01000011.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf11, whole genome shotgun sequence 91,098
NZ_QUHR01000012.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf12, whole genome shotgun sequence 83,500
NZ_QUHR01000013.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf13, whole genome shotgun sequence 61,426
NZ_QUHR01000014.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf14, whole genome shotgun sequence 48,932
NZ_QUHR01000015.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf15, whole genome shotgun sequence 30,767
NZ_QUHR01000016.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf16, whole genome shotgun sequence 17,592
NZ_QUHR01000017.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf17, whole genome shotgun sequence 16,393
NZ_QUHR01000018.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf18, whole genome shotgun sequence 16,277
NZ_QUHR01000019.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf19, whole genome shotgun sequence 11,134
NZ_QUHR01000020.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf20, whole genome shotgun sequence 10,815
NZ_QUHR01000021.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf21, whole genome shotgun sequence 8,254
NZ_QUHR01000022.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf22, whole genome shotgun sequence 8,197
NZ_QUHR01000023.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf23, whole genome shotgun sequence 7,662
NZ_QUHR01000024.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf24, whole genome shotgun sequence 6,354
NZ_QUHR01000025.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf25, whole genome shotgun sequence 6,243
NZ_QUHR01000026.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf26, whole genome shotgun sequence 4,670
NZ_QUHR01000027.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf27, whole genome shotgun sequence 3,555
NZ_QUHR01000028.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf28, whole genome shotgun sequence 1,756
NZ_QUHR01000029.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf29, whole genome shotgun sequence 1,724
NZ_QUHR01000030.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf30, whole genome shotgun sequence 1,540
NZ_QUHR01000031.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf31, whole genome shotgun sequence 1,449
NZ_QUHR01000032.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf32, whole genome shotgun sequence 1,345
NZ_QUHR01000033.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf33, whole genome shotgun sequence 1,114
NZ_QUHR01000034.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf34, whole genome shotgun sequence 565
NZ_QUHR01000035.1 Roseburia sp. AF12-17LB AF12-17LB.Scaf35, whole genome shotgun sequence 559

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory