fast.genomicscompare 6,575 genera of bacteria & archaea

 

Brotaphodocola sp003480315 AM33-3

Genome identifier: GCF_003480315.1

NCBI assembly name: ASM348031v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Brotaphodocola, Brotaphodocola sp003480315

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium

Scaffolds: 56

Genes: 3,077 Protein-coding: 2,927 RNAs: 72 pseudogenes: 78

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QUIV01000001.1 Clostridium sp. AM33-3 AM33-3.Scaf1, whole genome shotgun sequence 248,568
NZ_QUIV01000002.1 Clostridium sp. AM33-3 AM33-3.Scaf2, whole genome shotgun sequence 241,841
NZ_QUIV01000003.1 Clostridium sp. AM33-3 AM33-3.Scaf3, whole genome shotgun sequence 181,337
NZ_QUIV01000004.1 Clostridium sp. AM33-3 AM33-3.Scaf4, whole genome shotgun sequence 171,331
NZ_QUIV01000005.1 Clostridium sp. AM33-3 AM33-3.Scaf5, whole genome shotgun sequence 165,608
NZ_QUIV01000006.1 Clostridium sp. AM33-3 AM33-3.Scaf6, whole genome shotgun sequence 163,091
NZ_QUIV01000007.1 Clostridium sp. AM33-3 AM33-3.Scaf7, whole genome shotgun sequence 162,039
NZ_QUIV01000008.1 Clostridium sp. AM33-3 AM33-3.Scaf8, whole genome shotgun sequence 144,489
NZ_QUIV01000009.1 Clostridium sp. AM33-3 AM33-3.Scaf9, whole genome shotgun sequence 128,958
NZ_QUIV01000010.1 Clostridium sp. AM33-3 AM33-3.Scaf10, whole genome shotgun sequence 111,914
NZ_QUIV01000011.1 Clostridium sp. AM33-3 AM33-3.Scaf11, whole genome shotgun sequence 95,880
NZ_QUIV01000012.1 Clostridium sp. AM33-3 AM33-3.Scaf12, whole genome shotgun sequence 90,394
NZ_QUIV01000013.1 Clostridium sp. AM33-3 AM33-3.Scaf13, whole genome shotgun sequence 89,507
NZ_QUIV01000014.1 Clostridium sp. AM33-3 AM33-3.Scaf14, whole genome shotgun sequence 86,690
NZ_QUIV01000015.1 Clostridium sp. AM33-3 AM33-3.Scaf15, whole genome shotgun sequence 72,692
NZ_QUIV01000016.1 Clostridium sp. AM33-3 AM33-3.Scaf16, whole genome shotgun sequence 66,366
NZ_QUIV01000017.1 Clostridium sp. AM33-3 AM33-3.Scaf17, whole genome shotgun sequence 62,200
NZ_QUIV01000018.1 Clostridium sp. AM33-3 AM33-3.Scaf18, whole genome shotgun sequence 58,789
NZ_QUIV01000019.1 Clostridium sp. AM33-3 AM33-3.Scaf19, whole genome shotgun sequence 53,911
NZ_QUIV01000020.1 Clostridium sp. AM33-3 AM33-3.Scaf20, whole genome shotgun sequence 53,482
NZ_QUIV01000021.1 Clostridium sp. AM33-3 AM33-3.Scaf21, whole genome shotgun sequence 52,379
NZ_QUIV01000022.1 Clostridium sp. AM33-3 AM33-3.Scaf22, whole genome shotgun sequence 48,350
NZ_QUIV01000023.1 Clostridium sp. AM33-3 AM33-3.Scaf23, whole genome shotgun sequence 46,973
NZ_QUIV01000024.1 Clostridium sp. AM33-3 AM33-3.Scaf24, whole genome shotgun sequence 46,085
NZ_QUIV01000025.1 Clostridium sp. AM33-3 AM33-3.Scaf25, whole genome shotgun sequence 45,509
NZ_QUIV01000026.1 Clostridium sp. AM33-3 AM33-3.Scaf26, whole genome shotgun sequence 44,989
NZ_QUIV01000027.1 Clostridium sp. AM33-3 AM33-3.Scaf27, whole genome shotgun sequence 44,795
NZ_QUIV01000028.1 Clostridium sp. AM33-3 AM33-3.Scaf28, whole genome shotgun sequence 42,356
NZ_QUIV01000029.1 Clostridium sp. AM33-3 AM33-3.Scaf29, whole genome shotgun sequence 40,740
NZ_QUIV01000030.1 Clostridium sp. AM33-3 AM33-3.Scaf30, whole genome shotgun sequence 40,286
NZ_QUIV01000031.1 Clostridium sp. AM33-3 AM33-3.Scaf31, whole genome shotgun sequence 36,531
NZ_QUIV01000032.1 Clostridium sp. AM33-3 AM33-3.Scaf32, whole genome shotgun sequence 35,847
NZ_QUIV01000033.1 Clostridium sp. AM33-3 AM33-3.Scaf33, whole genome shotgun sequence 31,145
NZ_QUIV01000034.1 Clostridium sp. AM33-3 AM33-3.Scaf34, whole genome shotgun sequence 29,531
NZ_QUIV01000035.1 Clostridium sp. AM33-3 AM33-3.Scaf35, whole genome shotgun sequence 23,325
NZ_QUIV01000036.1 Clostridium sp. AM33-3 AM33-3.Scaf36, whole genome shotgun sequence 22,286
NZ_QUIV01000037.1 Clostridium sp. AM33-3 AM33-3.Scaf37, whole genome shotgun sequence 21,874
NZ_QUIV01000038.1 Clostridium sp. AM33-3 AM33-3.Scaf38, whole genome shotgun sequence 21,217
NZ_QUIV01000039.1 Clostridium sp. AM33-3 AM33-3.Scaf39, whole genome shotgun sequence 19,919
NZ_QUIV01000040.1 Clostridium sp. AM33-3 AM33-3.Scaf40, whole genome shotgun sequence 17,766
NZ_QUIV01000041.1 Clostridium sp. AM33-3 AM33-3.Scaf41, whole genome shotgun sequence 17,312
NZ_QUIV01000042.1 Clostridium sp. AM33-3 AM33-3.Scaf42, whole genome shotgun sequence 11,313
NZ_QUIV01000043.1 Clostridium sp. AM33-3 AM33-3.Scaf43, whole genome shotgun sequence 6,940
NZ_QUIV01000044.1 Clostridium sp. AM33-3 AM33-3.Scaf44, whole genome shotgun sequence 5,662
NZ_QUIV01000045.1 Clostridium sp. AM33-3 AM33-3.Scaf45, whole genome shotgun sequence 3,332
NZ_QUIV01000046.1 Clostridium sp. AM33-3 AM33-3.Scaf46, whole genome shotgun sequence 1,892
NZ_QUIV01000047.1 Clostridium sp. AM33-3 AM33-3.Scaf47, whole genome shotgun sequence 1,877
NZ_QUIV01000048.1 Clostridium sp. AM33-3 AM33-3.Scaf48, whole genome shotgun sequence 1,847
NZ_QUIV01000049.1 Clostridium sp. AM33-3 AM33-3.Scaf49, whole genome shotgun sequence 1,481
NZ_QUIV01000050.1 Clostridium sp. AM33-3 AM33-3.Scaf50, whole genome shotgun sequence 1,198
NZ_QUIV01000051.1 Clostridium sp. AM33-3 AM33-3.Scaf51, whole genome shotgun sequence 722
NZ_QUIV01000052.1 Clostridium sp. AM33-3 AM33-3.Scaf52, whole genome shotgun sequence 684
NZ_QUIV01000053.1 Clostridium sp. AM33-3 AM33-3.Scaf53, whole genome shotgun sequence 623
NZ_QUIV01000054.1 Clostridium sp. AM33-3 AM33-3.Scaf54, whole genome shotgun sequence 586
NZ_QUIV01000055.1 Clostridium sp. AM33-3 AM33-3.Scaf55, whole genome shotgun sequence 576
NZ_QUIV01000056.1 Clostridium sp. AM33-3 AM33-3.Scaf56, whole genome shotgun sequence 567

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory